JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC35F1_chr6_117902264_118322671	0/0	t0016	3883	3	2	0	0	1	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0017	3884	3	2	0	1	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0018	3880	2	0	1	0	0	1	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0019	3883	2	0	1	0	0	1	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0020	3883	2	2	0	0	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0021	3883	2	0	1	1	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0022	3882	2	1	1	0	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0023	3883	2	2	0	0	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0024	3883	2	2	0	0	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0025	3883	2	2	0	0	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0026	3883	2	0	1	0	1	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0027	3880	1	0	0	0	0	1	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0028	3881	1	0	0	1	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0029	3881	1	1	0	0	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0030	3882	1	0	0	0	1	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0031	3882	1	1	0	0	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0032	3882	1	1	0	0	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0033	3882	1	1	0	0	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0034	3882	1	0	1	0	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0035	3883	1	0	0	0	0	1	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0036	3883	1	0	0	1	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0037	3884	1	1	0	0	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0038	3884	1	0	0	1	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0039	3884	1	0	1	0	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0040	3884	1	1	0	0	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0041	3882	1	0	1	0	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0042	3883	1	0	0	1	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0043	3880	1	1	0	0	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0044	3882	1	1	0	0	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0045	3882	1	1	0	0	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0046	3883	1	1	0	0	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0047	3883	1	1	0	0	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0048	3884	1	1	0	0	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0049	3882	1	0	0	1	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0050	3880	1	0	1	0	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0051	3882	1	1	0	0	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0052	3882	1	1	0	0	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0053	3882	1	1	0	0	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0054	3882	1	1	0	0	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0055	3882	1	0	0	1	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0056	3883	1	0	0	0	0	1	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0057	3882	1	1	0	0	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0058	3883	1	1	0	0	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0059	3883	1	0	1	0	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0060	3883	1	0	0	0	0	1	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0061	3883	1	0	0	0	0	1	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0062	3884	1	1	0	0	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0063	3882	1	1	0	0	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0064	3882	1	0	0	1	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	t0065	3883	1	0	0	1	0	0	copy fasta	SLC35F1	chr6	117902264	118322671