JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC35F3_chr1_233899676_234329511	0/0	t0010	1671	1	0	0	1	0	0	copy fasta	SLC35F3	chr1	233899676	234329511
SLC35F3_chr1_233899676_234329511	0/0	t0011	1671	1	0	0	0	1	0	copy fasta	SLC35F3	chr1	233899676	234329511
SLC35F3_chr1_233899676_234329511	0/0	t0012	1671	1	1	0	0	0	0	copy fasta	SLC35F3	chr1	233899676	234329511
SLC35F3_chr1_233899676_234329511	0/0	t0013	1671	1	0	0	1	0	0	copy fasta	SLC35F3	chr1	233899676	234329511
SLC35F3_chr1_233899676_234329511	0/0	t0014	1671	1	1	0	0	0	0	copy fasta	SLC35F3	chr1	233899676	234329511
SLC35F3_chr1_233899676_234329511	0/0	t0015	1671	1	1	0	0	0	0	copy fasta	SLC35F3	chr1	233899676	234329511
SLC35F3_chr1_233899676_234329511	0/0	t0016	1671	1	0	1	0	0	0	copy fasta	SLC35F3	chr1	233899676	234329511
SLC35F4_chr14_57558920_57871092	0/0	t0001	483	168	63	34	41	9	21	copy fasta	SLC35F4	chr14	57558920	57871092
SLC35F4_chr14_57558920_57871092	0/0	t0002	489	29	2	0	26	1	0	copy fasta	SLC35F4	chr14	57558920	57871092
SLC35F4_chr14_57558920_57871092	0/0	t0003	486	14	9	4	0	0	1	copy fasta	SLC35F4	chr14	57558920	57871092
SLC35F4_chr14_57558920_57871092	0/0	t0004	495	2	2	0	0	0	0	copy fasta	SLC35F4	chr14	57558920	57871092
SLC35F4_chr14_57558920_57871092	0/0	t0005	483	1	1	0	0	0	0	copy fasta	SLC35F4	chr14	57558920	57871092
SLC35F4_chr14_57558920_57871092	0/0	t0006	489	1	1	0	0	0	0	copy fasta	SLC35F4	chr14	57558920	57871092
SLC35F4_chr14_57558920_57871092	0/0	t0007	486	1	1	0	0	0	0	copy fasta	SLC35F4	chr14	57558920	57871092
SLC35F4_chr14_57558920_57871092	0/0	t0008	483	1	0	0	1	0	0	copy fasta	SLC35F4	chr14	57558920	57871092
SLC35F4_chr14_57558920_57871092	0/0	t0009	483	1	1	0	0	0	0	copy fasta	SLC35F4	chr14	57558920	57871092
SLC35F5_chr2_113701709_113761642	1/0	t0001	8743	76	10	18	36	4	7	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0002	8743	47	5	3	32	1	6	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0003	8745	33	3	10	11	2	7	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0004	8744	15	0	0	14	0	1	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/1	t0005	8740	13	0	5	2	0	5	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0006	8750	10	5	2	3	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0007	8750	10	0	2	6	1	1	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0008	8743	9	8	1	0	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0009	8743	9	0	2	3	1	3	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0010	8746	8	8	0	0	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0011	8742	7	1	3	0	0	3	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0012	8744	6	1	3	1	0	1	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0013	8742	6	0	0	5	1	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0014	8744	6	4	0	2	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0015	8745	5	5	0	0	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0016	8741	5	5	0	0	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0017	8742	5	1	0	3	0	1	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0018	8745	4	4	0	0	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0019	8740	4	0	0	4	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0020	8736	4	3	1	0	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0021	8750	3	3	0	0	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0022	8749	3	1	1	0	1	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0023	8750	2	2	0	0	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0024	8742	2	0	0	2	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0025	8749	2	0	0	2	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0026	8745	2	2	0	0	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0027	8739	2	0	0	0	0	2	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0028	8743	2	1	1	0	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0029	8743	2	0	0	2	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0030	8740	2	0	1	0	0	1	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0031	8744	2	0	0	2	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0032	8743	2	2	0	0	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0033	8745	1	0	0	0	0	1	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0034	8743	1	1	0	0	0	0	copy fasta	SLC35F5	chr2	113701709	113761642