JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC35F5_chr2_113701709_113761642	0/0	t0035	8748	1	0	0	0	0	1	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0036	8744	1	1	0	0	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0037	8746	1	1	0	0	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0038	8742	1	1	0	0	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0039	8751	1	1	0	0	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0040	8749	1	0	0	0	1	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0041	8750	1	0	0	0	0	1	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0042	8746	1	0	0	0	0	1	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0043	8750	1	0	0	0	0	1	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0044	8745	1	1	0	0	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0045	8746	1	1	0	0	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0046	8742	1	0	0	1	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0047	8739	1	0	0	0	0	1	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0048	8743	1	0	0	0	0	1	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0049	8742	1	0	0	1	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0050	8742	1	1	0	0	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0051	8743	1	0	0	1	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0052	8743	1	0	0	1	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0053	8743	1	0	0	1	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0054	8743	1	1	0	0	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0055	8743	1	1	0	0	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0056	8743	1	0	0	0	0	1	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0057	8743	1	0	0	1	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0058	8743	1	0	1	0	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0059	8743	1	0	0	1	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0060	8743	1	1	0	0	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0061	8743	1	1	0	0	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0062	8737	1	1	0	0	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0063	8744	1	0	1	0	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0064	8744	1	0	0	1	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0065	8742	1	1	0	0	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0066	8743	1	0	1	0	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0067	8741	1	1	0	0	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	t0068	8743	1	1	0	0	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F6_chr2_26759284_26786231	0/0	t0001	2787	72	11	24	21	3	13	copy fasta	SLC35F6	chr2	26759284	26786231
SLC35F6_chr2_26759284_26786231	0/1	t0002	2788	46	0	11	23	2	9	copy fasta	SLC35F6	chr2	26759284	26786231
SLC35F6_chr2_26759284_26786231	1/0	t0003	2787	44	0	6	25	2	10	copy fasta	SLC35F6	chr2	26759284	26786231
SLC35F6_chr2_26759284_26786231	0/0	t0004	2788	30	15	6	7	2	0	copy fasta	SLC35F6	chr2	26759284	26786231
SLC35F6_chr2_26759284_26786231	0/0	t0005	2787	26	6	7	6	4	3	copy fasta	SLC35F6	chr2	26759284	26786231
SLC35F6_chr2_26759284_26786231	0/0	t0006	2787	14	11	2	1	0	0	copy fasta	SLC35F6	chr2	26759284	26786231
SLC35F6_chr2_26759284_26786231	0/0	t0007	2787	11	8	3	0	0	0	copy fasta	SLC35F6	chr2	26759284	26786231
SLC35F6_chr2_26759284_26786231	0/0	t0008	2787	10	8	2	0	0	0	copy fasta	SLC35F6	chr2	26759284	26786231
SLC35F6_chr2_26759284_26786231	0/0	t0009	2788	10	0	3	6	0	1	copy fasta	SLC35F6	chr2	26759284	26786231
SLC35F6_chr2_26759284_26786231	0/0	t0010	2787	9	9	0	0	0	0	copy fasta	SLC35F6	chr2	26759284	26786231
SLC35F6_chr2_26759284_26786231	0/0	t0011	2787	4	4	0	0	0	0	copy fasta	SLC35F6	chr2	26759284	26786231
SLC35F6_chr2_26759284_26786231	0/0	t0012	2788	4	4	0	0	0	0	copy fasta	SLC35F6	chr2	26759284	26786231
SLC35F6_chr2_26759284_26786231	0/0	t0013	2789	4	0	1	1	0	2	copy fasta	SLC35F6	chr2	26759284	26786231
SLC35F6_chr2_26759284_26786231	0/0	t0014	2787	2	1	1	0	0	0	copy fasta	SLC35F6	chr2	26759284	26786231
SLC35F6_chr2_26759284_26786231	0/0	t0015	2787	2	2	0	0	0	0	copy fasta	SLC35F6	chr2	26759284	26786231
SLC35F6_chr2_26759284_26786231	0/0	t0016	2787	1	0	0	0	0	1	copy fasta	SLC35F6	chr2	26759284	26786231