JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC35F6_chr2_26759284_26786231	0/0	t0017	2787	1	1	0	0	0	0	copy fasta	SLC35F6	chr2	26759284	26786231
SLC35F6_chr2_26759284_26786231	0/0	t0018	2788	1	1	0	0	0	0	copy fasta	SLC35F6	chr2	26759284	26786231
SLC35F6_chr2_26759284_26786231	0/0	t0019	2788	1	0	0	1	0	0	copy fasta	SLC35F6	chr2	26759284	26786231
SLC35F6_chr2_26759284_26786231	0/0	t0020	2788	1	0	0	0	0	1	copy fasta	SLC35F6	chr2	26759284	26786231
SLC35F6_chr2_26759284_26786231	0/0	t0021	2787	1	1	0	0	0	0	copy fasta	SLC35F6	chr2	26759284	26786231
SLC35F6_chr2_26759284_26786231	0/0	t0022	2788	1	1	0	0	0	0	copy fasta	SLC35F6	chr2	26759284	26786231
SLC35F6_chr2_26759284_26786231	0/0	t0023	2787	1	0	0	0	1	0	copy fasta	SLC35F6	chr2	26759284	26786231
SLC35F6_chr2_26759284_26786231	0/0	t0024	2788	1	1	0	0	0	0	copy fasta	SLC35F6	chr2	26759284	26786231
SLC35F6_chr2_26759284_26786231	0/0	t0025	2788	1	1	0	0	0	0	copy fasta	SLC35F6	chr2	26759284	26786231
SLC35F6_chr2_26759284_26786231	0/0	t0026	2788	1	1	0	0	0	0	copy fasta	SLC35F6	chr2	26759284	26786231
SLC35F6_chr2_26759284_26786231	0/0	t0027	2788	1	1	0	0	0	0	copy fasta	SLC35F6	chr2	26759284	26786231
SLC35F6_chr2_26759284_26786231	0/0	t0028	2788	1	0	0	1	0	0	copy fasta	SLC35F6	chr2	26759284	26786231
SLC35F6_chr2_26759284_26786231	0/0	t0029	2788	1	1	0	0	0	0	copy fasta	SLC35F6	chr2	26759284	26786231
SLC35G1_chr10_93888978_93908824	0/1	t0001	2389	149	23	24	76	6	19	copy fasta	SLC35G1	chr10	93888978	93908824
SLC35G1_chr10_93888978_93908824	1/0	t0002	2391	116	33	30	27	8	17	copy fasta	SLC35G1	chr10	93888978	93908824
SLC35G1_chr10_93888978_93908824	0/0	t0003	2391	11	11	0	0	0	0	copy fasta	SLC35G1	chr10	93888978	93908824
SLC35G1_chr10_93888978_93908824	0/0	t0004	2392	9	8	0	1	0	0	copy fasta	SLC35G1	chr10	93888978	93908824
SLC35G1_chr10_93888978_93908824	0/0	t0005	2389	6	0	0	6	0	0	copy fasta	SLC35G1	chr10	93888978	93908824
SLC35G1_chr10_93888978_93908824	0/0	t0006	2392	5	5	0	0	0	0	copy fasta	SLC35G1	chr10	93888978	93908824
SLC35G1_chr10_93888978_93908824	0/0	t0007	2391	4	4	0	0	0	0	copy fasta	SLC35G1	chr10	93888978	93908824
SLC35G1_chr10_93888978_93908824	0/0	t0008	2385	3	3	0	0	0	0	copy fasta	SLC35G1	chr10	93888978	93908824
SLC35G1_chr10_93888978_93908824	0/0	t0009	2389	2	0	0	2	0	0	copy fasta	SLC35G1	chr10	93888978	93908824
SLC35G1_chr10_93888978_93908824	0/0	t0010	2391	2	1	1	0	0	0	copy fasta	SLC35G1	chr10	93888978	93908824
SLC35G1_chr10_93888978_93908824	0/0	t0011	2391	2	2	0	0	0	0	copy fasta	SLC35G1	chr10	93888978	93908824
SLC35G1_chr10_93888978_93908824	0/0	t0012	2391	2	0	1	0	0	1	copy fasta	SLC35G1	chr10	93888978	93908824
SLC35G1_chr10_93888978_93908824	0/0	t0013	2419	1	0	0	1	0	0	copy fasta	SLC35G1	chr10	93888978	93908824
SLC35G1_chr10_93888978_93908824	0/0	t0014	2388	1	0	0	1	0	0	copy fasta	SLC35G1	chr10	93888978	93908824
SLC35G1_chr10_93888978_93908824	0/0	t0015	2391	1	0	0	0	0	1	copy fasta	SLC35G1	chr10	93888978	93908824
SLC35G1_chr10_93888978_93908824	0/0	t0016	2391	1	1	0	0	0	0	copy fasta	SLC35G1	chr10	93888978	93908824
SLC35G1_chr10_93888978_93908824	0/0	t0017	2391	1	1	0	0	0	0	copy fasta	SLC35G1	chr10	93888978	93908824
SLC35G2_chr3_136814126_136860888	0/1	t0001	712	207	39	50	79	9	29	copy fasta	SLC35G2	chr3	136814126	136860888
SLC35G2_chr3_136814126_136860888	1/0	t0002	711	67	27	14	17	4	4	copy fasta	SLC35G2	chr3	136814126	136860888
SLC35G2_chr3_136814126_136860888	0/0	t0003	711	25	5	4	13	1	2	copy fasta	SLC35G2	chr3	136814126	136860888
SLC35G2_chr3_136814126_136860888	0/0	t0004	712	5	0	1	4	0	0	copy fasta	SLC35G2	chr3	136814126	136860888
SLC35G2_chr3_136814126_136860888	0/0	t0005	712	3	3	0	0	0	0	copy fasta	SLC35G2	chr3	136814126	136860888
SLC35G2_chr3_136814126_136860888	0/0	t0006	714	2	2	0	0	0	0	copy fasta	SLC35G2	chr3	136814126	136860888
SLC35G2_chr3_136814126_136860888	0/0	t0007	712	1	1	0	0	0	0	copy fasta	SLC35G2	chr3	136814126	136860888
SLC35G2_chr3_136814126_136860888	0/0	t0008	712	1	0	0	0	0	1	copy fasta	SLC35G2	chr3	136814126	136860888
SLC35G2_chr3_136814126_136860888	0/0	t0009	714	1	1	0	0	0	0	copy fasta	SLC35G2	chr3	136814126	136860888
SLC35G2_chr3_136814126_136860888	0/0	t0010	712	1	1	0	0	0	0	copy fasta	SLC35G2	chr3	136814126	136860888
SLC35G2_chr3_136814126_136860888	0/0	t0011	712	1	0	0	0	0	1	copy fasta	SLC35G2	chr3	136814126	136860888
SLC35G2_chr3_136814126_136860888	0/0	t0012	711	1	0	0	0	0	1	copy fasta	SLC35G2	chr3	136814126	136860888
SLC35G2_chr3_136814126_136860888	0/0	t0013	712	1	0	1	0	0	0	copy fasta	SLC35G2	chr3	136814126	136860888
SLC35G2_chr3_136814126_136860888	0/0	t0014	714	1	1	0	0	0	0	copy fasta	SLC35G2	chr3	136814126	136860888
SLC35G2_chr3_136814126_136860888	0/0	t0015	712	1	0	0	1	0	0	copy fasta	SLC35G2	chr3	136814126	136860888
SLC35G3_chr17_35187520_35199393	0/1	t0001	858	214	30	43	111	4	25	copy fasta	SLC35G3	chr17	35187520	35199393
SLC35G3_chr17_35187520_35199393	0/0	t0002	859	102	12	14	65	2	9	copy fasta	SLC35G3	chr17	35187520	35199393
SLC35G3_chr17_35187520_35199393	0/0	t0003	858	57	17	3	32	1	4	copy fasta	SLC35G3	chr17	35187520	35199393
SLC35G3_chr17_35187520_35199393	0/0	t0004	859	26	13	8	0	2	3	copy fasta	SLC35G3	chr17	35187520	35199393
SLC35G3_chr17_35187520_35199393	0/0	t0005	859	25	9	0	13	0	3	copy fasta	SLC35G3	chr17	35187520	35199393