JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC35G3_chr17_35187520_35199393	0/0	t0006	858	17	1	9	0	3	4	copy fasta	SLC35G3	chr17	35187520	35199393
SLC35G3_chr17_35187520_35199393	0/0	t0007	858	11	0	0	11	0	0	copy fasta	SLC35G3	chr17	35187520	35199393
SLC35G3_chr17_35187520_35199393	0/0	t0008	858	9	8	0	1	0	0	copy fasta	SLC35G3	chr17	35187520	35199393
SLC35G3_chr17_35187520_35199393	0/0	t0009	857	4	0	4	0	0	0	copy fasta	SLC35G3	chr17	35187520	35199393
SLC35G3_chr17_35187520_35199393	0/0	t0010	857	3	3	0	0	0	0	copy fasta	SLC35G3	chr17	35187520	35199393
SLC35G3_chr17_35187520_35199393	0/0	t0011	858	3	3	0	0	0	0	copy fasta	SLC35G3	chr17	35187520	35199393
SLC35G3_chr17_35187520_35199393	0/0	t0012	859	1	0	0	0	0	1	copy fasta	SLC35G3	chr17	35187520	35199393
SLC35G3_chr17_35187520_35199393	0/0	t0013	857	1	0	0	1	0	0	copy fasta	SLC35G3	chr17	35187520	35199393
SLC35G3_chr17_35187520_35199393	0/0	t0014	858	1	1	0	0	0	0	copy fasta	SLC35G3	chr17	35187520	35199393
SLC35G3_chr17_35187520_35199393	1/0	t0015	858	1	0	0	0	0	0	copy fasta	SLC35G3	chr17	35187520	35199393
SLC35G3_chr17_35187520_35199393	0/0	t0016	859	1	1	0	0	0	0	copy fasta	SLC35G3	chr17	35187520	35199393
SLC35G3_chr17_35187520_35199393	0/0	t0017	858	1	0	0	0	0	1	copy fasta	SLC35G3	chr17	35187520	35199393
SLC35G3_chr17_35187520_35199393	0/0	t0018	859	1	0	1	0	0	0	copy fasta	SLC35G3	chr17	35187520	35199393
SLC35G5_chr8_11326012_11337360	0/0	t0001	333	184	18	26	112	6	22	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	1/1	t0002	333	117	39	37	8	12	19	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	0/0	t0003	333	61	3	12	44	0	2	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	0/0	t0004	333	60	38	1	18	0	3	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G6_chr17_7476446_7488496	0/1	t0001	567	227	40	54	104	9	19	copy fasta	SLC35G6	chr17	7476446	7488496
SLC35G6_chr17_7476446_7488496	1/0	t0002	567	102	28	21	41	5	6	copy fasta	SLC35G6	chr17	7476446	7488496
SLC35G6_chr17_7476446_7488496	0/0	t0003	567	61	26	5	13	2	15	copy fasta	SLC35G6	chr17	7476446	7488496
SLC35G6_chr17_7476446_7488496	0/0	t0004	567	15	3	0	12	0	0	copy fasta	SLC35G6	chr17	7476446	7488496
SLC35G6_chr17_7476446_7488496	0/0	t0005	567	2	0	0	0	0	2	copy fasta	SLC35G6	chr17	7476446	7488496
SLC35G6_chr17_7476446_7488496	0/0	t0006	567	1	0	0	1	0	0	copy fasta	SLC35G6	chr17	7476446	7488496
SLC35G6_chr17_7476446_7488496	0/0	t0007	567	1	0	0	1	0	0	copy fasta	SLC35G6	chr17	7476446	7488496
SLC35G6_chr17_7476446_7488496	0/0	t0008	567	1	1	0	0	0	0	copy fasta	SLC35G6	chr17	7476446	7488496
SLC35G6_chr17_7476446_7488496	0/0	t0009	567	1	1	0	0	0	0	copy fasta	SLC35G6	chr17	7476446	7488496
SLC35G6_chr17_7476446_7488496	0/0	t0010	567	1	1	0	0	0	0	copy fasta	SLC35G6	chr17	7476446	7488496
SLC36A1_chr5_151442603_151497379	0/0	t0001	4346	69	0	9	49	3	8	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0002	4345	63	5	8	37	4	9	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	1/1	t0003	4342	61	4	19	26	2	8	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0004	4346	32	0	0	31	0	1	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0005	4346	31	29	2	0	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0006	4346	17	0	8	1	3	5	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0007	4345	16	0	1	15	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0008	4342	15	5	4	4	2	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0009	4343	13	13	0	0	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0010	4346	10	8	1	1	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0011	4346	10	9	1	0	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0012	4346	6	0	0	6	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0013	4343	5	0	2	2	0	1	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0014	4346	4	3	1	0	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0015	4346	3	1	2	0	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0016	4345	2	0	0	2	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0017	4346	2	2	0	0	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0018	4346	2	2	0	0	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0019	4346	2	2	0	0	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0020	4342	2	1	1	0	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0021	4346	2	2	0	0	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0022	4342	2	0	2	0	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0023	4342	2	0	2	0	0	0	copy fasta	SLC36A1	chr5	151442603	151497379