Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BCLAF1_chr6_136251627_136294846	0/0	t0046	4718	1	0	0	1	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0047	4722	1	1	0	0	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0048	4750	1	1	0	0	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0049	4742	1	0	0	1	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0050	4746	1	0	0	1	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0051	4726	1	0	1	0	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0052	4729	1	0	1	0	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0053	4728	1	1	0	0	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0054	4734	1	1	0	0	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0055	4730	1	1	0	0	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0056	4730	1	1	0	0	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0057	4730	1	1	0	0	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0058	4726	1	0	0	1	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0059	4726	1	0	0	1	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0060	4734	1	1	0	0	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0061	4726	1	1	0	0	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0062	4726	1	0	0	0	0	1	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	t0063	4734	1	0	0	1	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF3_chrX_19907860_19996061	0/0	t0001	4628	72	3	16	40	5	8	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0002	4634	17	3	7	5	2	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0003	4621	6	4	2	0	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0004	4630	5	3	2	0	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0005	4624	5	4	1	0	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/1	t0006	4631	5	0	2	2	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0007	4619	5	0	0	5	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0008	4637	4	2	1	1	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0009	4631	4	3	1	0	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0010	4631	4	4	0	0	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0011	4628	4	0	2	2	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0012	4639	3	3	0	0	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0013	4630	3	2	1	0	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0014	4631	3	2	1	0	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0015	4630	3	2	1	0	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0016	4624	3	3	0	0	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0017	4625	3	1	0	2	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0018	4648	2	2	0	0	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0019	4627	2	1	1	0	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0020	4625	2	1	0	0	0	1	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0021	4622	2	2	0	0	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0022	4637	2	0	0	2	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0023	4633	2	0	1	1	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	1/0	t0024	4634	2	0	1	0	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0025	4629	2	0	0	0	0	2	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0026	4622	2	2	0	0	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0027	4645	1	1	0	0	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0028	4643	1	1	0	0	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0029	4642	1	1	0	0	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0030	4639	1	1	0	0	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0031	4640	1	1	0	0	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0032	4636	1	1	0	0	0	0	copy fasta	BCLAF3	chrX	19907860	19996061