JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC36A1_chr5_151442603_151497379	0/0	t0024	4345	2	2	0	0	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0025	4345	2	2	0	0	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0026	4345	1	0	1	0	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0027	4346	1	0	0	0	0	1	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0028	4346	1	0	0	0	0	1	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0029	4346	1	0	0	0	0	1	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0030	4346	1	0	0	0	0	1	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0031	4346	1	0	0	1	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0032	4346	1	0	0	1	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0033	4346	1	0	0	0	0	1	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0034	4346	1	1	0	0	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0035	4345	1	0	0	1	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0036	4346	1	1	0	0	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0037	4345	1	0	0	0	0	1	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0038	4345	1	0	0	1	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0039	4345	1	0	0	1	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0040	4346	1	1	0	0	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0041	4346	1	0	0	1	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0042	4346	1	0	0	1	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0043	4346	1	0	0	1	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0044	4343	1	1	0	0	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0045	4346	1	0	0	0	0	1	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0046	4346	1	1	0	0	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0047	4342	1	0	1	0	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0048	4342	1	0	1	0	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0049	4343	1	0	0	1	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0050	4342	1	0	1	0	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0051	4342	1	0	0	0	0	1	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0052	4342	1	0	1	0	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0053	4343	1	0	0	1	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	t0054	4346	1	1	0	0	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A2_chr5_151309972_151352559	0/0	t0001	1949	82	7	5	57	2	11	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/1	t0002	1951	72	12	15	34	3	7	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	1/0	t0003	1945	51	9	22	2	7	10	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	t0004	1950	49	17	13	13	1	5	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	t0005	1952	25	0	0	24	0	1	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	t0006	1950	22	19	2	0	0	1	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	t0007	1950	12	10	2	0	0	0	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	t0008	1948	8	0	4	3	0	1	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	t0009	1952	7	0	0	5	1	1	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	t0010	1949	6	2	1	2	0	1	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	t0011	1950	3	3	0	0	0	0	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	t0012	1945	2	2	0	0	0	0	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	t0013	1945	2	2	0	0	0	0	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	t0014	1948	2	2	0	0	0	0	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	t0015	1946	2	0	1	0	0	1	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	t0016	1950	2	0	0	2	0	0	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	t0017	1945	1	1	0	0	0	0	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	t0018	1948	1	0	0	1	0	0	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	t0019	1949	1	0	0	0	0	1	copy fasta	SLC36A2	chr5	151309972	151352559