JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC36A2_chr5_151309972_151352559	0/0	t0020	1949	1	0	0	1	0	0	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	t0021	1949	1	0	0	1	0	0	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	t0022	1949	1	0	1	0	0	0	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	t0023	1949	1	1	0	0	0	0	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	t0024	1950	1	1	0	0	0	0	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	t0025	1950	1	1	0	0	0	0	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	t0026	1951	1	0	0	1	0	0	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	t0027	1951	1	1	0	0	0	0	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A3_chr5_151271358_151308766	1/0	t0001	1448	161	18	27	86	9	20	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/1	t0002	1448	84	5	23	34	6	15	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/0	t0003	1448	66	19	8	35	1	3	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/0	t0004	1448	24	22	1	0	0	1	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/0	t0005	1448	16	0	0	13	0	3	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/0	t0006	1448	14	12	2	0	0	0	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/0	t0007	1448	10	10	0	0	0	0	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/0	t0008	1448	6	0	0	6	0	0	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/0	t0009	1448	5	0	0	5	0	0	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/0	t0010	1448	4	0	0	3	0	1	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/0	t0011	1448	4	1	3	0	0	0	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/0	t0012	1448	2	2	0	0	0	0	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/0	t0013	1448	2	0	2	0	0	0	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/0	t0014	1448	1	0	0	1	0	0	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/0	t0015	1448	1	1	0	0	0	0	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/0	t0016	1448	1	1	0	0	0	0	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/0	t0017	1448	1	0	0	0	0	1	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/0	t0018	1448	1	0	0	1	0	0	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/0	t0019	1448	1	1	0	0	0	0	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A4_chr11_93139174_93202991	0/1	t0001	4522	93	9	19	48	1	15	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	t0002	4523	78	3	15	48	4	8	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	t0003	4523	70	16	16	27	1	10	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	t0004	4523	27	7	4	10	5	1	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	t0005	4522	17	12	2	1	1	1	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	1/0	t0006	4523	14	13	0	0	0	0	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	t0007	4522	11	0	0	11	0	0	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	t0008	4523	8	0	0	7	0	1	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	t0009	4524	7	0	2	0	0	5	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	t0010	4522	4	3	0	0	0	1	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	t0011	4522	4	3	0	0	0	1	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	t0012	4523	4	0	0	4	0	0	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	t0013	4523	3	3	0	0	0	0	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	t0014	4523	3	3	0	0	0	0	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	t0015	4523	3	3	0	0	0	0	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	t0016	4523	3	0	0	3	0	0	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	t0017	4522	2	2	0	0	0	0	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	t0018	4523	2	2	0	0	0	0	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	t0019	4523	1	0	1	0	0	0	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	t0020	4523	1	1	0	0	0	0	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	t0021	4522	1	0	0	0	0	1	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	t0022	4522	1	0	0	1	0	0	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	t0023	4523	1	0	0	1	0	0	copy fasta	SLC36A4	chr11	93139174	93202991