JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC36A4_chr11_93139174_93202991	0/0	t0024	4523	1	0	0	1	0	0	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	t0025	4523	1	0	0	1	0	0	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	t0026	4523	1	0	0	1	0	0	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	t0027	4523	1	0	1	0	0	0	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	t0028	4523	1	1	0	0	0	0	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	t0029	4523	1	0	0	1	0	0	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	t0030	4523	1	1	0	0	0	0	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	t0031	4523	1	1	0	0	0	0	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	t0032	4523	1	1	0	0	0	0	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	t0033	4523	1	0	0	1	0	0	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	t0034	4523	1	0	0	1	0	0	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	t0035	4523	1	0	0	1	0	0	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	t0036	4523	1	1	0	0	0	0	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	t0037	4523	1	1	0	0	0	0	copy fasta	SLC36A4	chr11	93139174	93202991
SLC37A1_chr21_42508852_42586426	0/1	t0001	2111	82	4	19	29	7	22	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	1/0	t0002	2111	80	1	8	57	2	11	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0003	2111	52	1	3	40	3	5	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0004	2111	12	6	4	2	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0005	2111	11	0	7	0	4	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0006	2112	8	7	1	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0007	2111	8	0	0	8	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0008	2112	7	6	1	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0009	2111	7	0	0	3	0	4	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0010	2111	6	4	2	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0011	2112	6	6	0	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0012	2111	5	1	1	1	0	2	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0013	2108	4	4	0	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0014	2111	4	4	0	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0015	2111	4	3	1	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0016	2111	4	4	0	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0017	2108	4	4	0	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0018	2111	3	3	0	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0019	2108	3	1	2	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0020	2111	3	0	3	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0021	2112	3	3	0	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0022	2111	2	2	0	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0023	2112	2	2	0	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0024	2112	2	2	0	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0025	2111	2	0	0	2	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0026	2111	2	2	0	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0027	2111	2	1	1	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0028	2111	2	2	0	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0029	2111	2	2	0	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0030	2111	2	2	0	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0031	2069	1	0	1	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0032	2111	1	0	0	0	0	1	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0033	2111	1	1	0	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0034	2111	1	1	0	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0035	2111	1	1	0	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0036	2111	1	1	0	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426