JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC37A1_chr21_42508852_42586426	0/0	t0037	2112	1	1	0	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0038	2111	1	0	1	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0039	2111	1	0	0	1	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0040	2111	1	0	0	1	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0041	2111	1	0	0	1	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0042	2111	1	0	0	1	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0043	2107	1	0	1	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0044	2111	1	1	0	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0045	2111	1	1	0	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0046	2108	1	1	0	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0047	2111	1	1	0	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0048	2111	1	1	0	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0049	2111	1	0	0	0	0	1	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0050	2111	1	1	0	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0051	2111	1	0	0	1	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	t0052	2111	1	0	0	1	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A2_chr11_125058305_125095516	0/0	t0001	2452	94	3	5	79	1	6	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	t0002	2446	62	0	13	40	5	4	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/1	t0003	2451	60	17	12	21	0	9	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	t0004	2452	35	12	6	8	3	6	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	t0005	2451	25	5	3	11	2	4	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	t0006	2452	19	1	8	2	2	6	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	1/0	t0007	2446	18	0	17	0	0	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	t0008	2452	16	13	2	0	0	1	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	t0009	2452	14	12	1	1	0	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	t0010	2452	10	9	1	0	0	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	t0011	2446	6	0	3	0	1	2	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	t0012	2452	6	0	0	5	0	1	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	t0013	2451	5	5	0	0	0	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	t0014	2451	4	0	0	4	0	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	t0015	2452	4	4	0	0	0	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	t0016	2452	4	4	0	0	0	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	t0017	2452	3	0	0	0	0	3	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	t0018	2451	3	0	1	0	0	2	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	t0019	2452	2	0	0	2	0	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	t0020	2452	2	0	0	2	0	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	t0021	2446	2	0	0	2	0	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	t0022	2446	2	0	0	2	0	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	t0023	2446	2	0	0	2	0	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	t0024	2451	1	0	0	1	0	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	t0025	2452	1	0	0	1	0	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	t0026	2452	1	0	0	0	0	1	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	t0027	2451	1	1	0	0	0	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	t0028	2286	1	0	0	0	0	1	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	t0029	2446	1	0	0	0	0	1	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	t0030	2446	1	0	0	1	0	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	t0031	2446	1	0	1	0	0	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	t0032	2451	1	0	1	0	0	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	t0033	2452	1	0	0	1	0	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	t0034	2452	1	1	0	0	0	0	copy fasta	SLC37A2	chr11	125058305	125095516