JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC37A2_chr11_125058305_125095516	0/0	t0035	2452	1	0	0	0	1	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	t0036	2452	1	0	0	1	0	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	t0037	2452	1	1	0	0	0	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	t0038	2452	1	0	0	0	0	1	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	t0039	2452	1	0	0	0	1	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	t0040	2452	1	0	0	0	0	1	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	t0041	2452	1	1	0	0	0	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	t0042	2452	1	0	1	0	0	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	t0043	2452	1	0	0	0	0	1	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	t0044	2452	1	0	0	1	0	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	t0045	2446	1	0	0	1	0	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	t0046	2451	1	1	0	0	0	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	t0047	2452	1	0	1	0	0	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	t0048	2446	1	0	0	1	0	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	t0049	2452	1	0	0	1	0	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A3_chr7_140328752_140403530	0/0	t0001	1846	164	3	30	104	4	23	copy fasta	SLC37A3	chr7	140328752	140403530
SLC37A3_chr7_140328752_140403530	0/0	t0002	1847	70	30	8	23	2	7	copy fasta	SLC37A3	chr7	140328752	140403530
SLC37A3_chr7_140328752_140403530	0/1	t0003	1847	26	9	6	0	2	8	copy fasta	SLC37A3	chr7	140328752	140403530
SLC37A3_chr7_140328752_140403530	1/0	t0004	1846	21	0	1	13	3	3	copy fasta	SLC37A3	chr7	140328752	140403530
SLC37A3_chr7_140328752_140403530	0/0	t0005	1847	19	13	5	0	0	1	copy fasta	SLC37A3	chr7	140328752	140403530
SLC37A3_chr7_140328752_140403530	0/0	t0006	1847	12	1	8	0	2	1	copy fasta	SLC37A3	chr7	140328752	140403530
SLC37A3_chr7_140328752_140403530	0/0	t0007	1847	6	5	1	0	0	0	copy fasta	SLC37A3	chr7	140328752	140403530
SLC37A3_chr7_140328752_140403530	0/0	t0008	1847	6	2	1	1	2	0	copy fasta	SLC37A3	chr7	140328752	140403530
SLC37A3_chr7_140328752_140403530	0/0	t0009	1847	4	4	0	0	0	0	copy fasta	SLC37A3	chr7	140328752	140403530
SLC37A3_chr7_140328752_140403530	0/0	t0010	1847	3	3	0	0	0	0	copy fasta	SLC37A3	chr7	140328752	140403530
SLC37A3_chr7_140328752_140403530	0/0	t0011	1847	3	3	0	0	0	0	copy fasta	SLC37A3	chr7	140328752	140403530
SLC37A3_chr7_140328752_140403530	0/0	t0012	1847	2	0	1	0	0	1	copy fasta	SLC37A3	chr7	140328752	140403530
SLC37A3_chr7_140328752_140403530	0/0	t0013	1847	2	2	0	0	0	0	copy fasta	SLC37A3	chr7	140328752	140403530
SLC37A3_chr7_140328752_140403530	0/0	t0014	1847	1	0	0	0	1	0	copy fasta	SLC37A3	chr7	140328752	140403530
SLC37A3_chr7_140328752_140403530	0/0	t0015	1845	1	1	0	0	0	0	copy fasta	SLC37A3	chr7	140328752	140403530
SLC37A3_chr7_140328752_140403530	0/0	t0016	1847	1	1	0	0	0	0	copy fasta	SLC37A3	chr7	140328752	140403530
SLC37A3_chr7_140328752_140403530	0/0	t0017	1847	1	1	0	0	0	0	copy fasta	SLC37A3	chr7	140328752	140403530
SLC37A3_chr7_140328752_140403530	0/0	t0018	1846	1	0	1	0	0	0	copy fasta	SLC37A3	chr7	140328752	140403530
SLC37A3_chr7_140328752_140403530	0/0	t0019	1845	1	1	0	0	0	0	copy fasta	SLC37A3	chr7	140328752	140403530
SLC37A3_chr7_140328752_140403530	0/0	t0020	1846	1	1	0	0	0	0	copy fasta	SLC37A3	chr7	140328752	140403530
SLC37A3_chr7_140328752_140403530	0/0	t0021	1846	1	0	0	1	0	0	copy fasta	SLC37A3	chr7	140328752	140403530
SLC38A10_chr17_81239811_81300307	1/0	t0001	1132	74	39	19	8	6	1	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/1	t0002	1132	50	1	11	25	2	10	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	t0003	1132	28	7	3	15	1	2	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	t0004	1132	25	3	5	10	1	6	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	t0005	1132	23	16	5	1	0	1	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	t0006	1132	2	0	2	0	0	0	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	t0007	1132	2	2	0	0	0	0	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	t0008	1132	2	1	1	0	0	0	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	t0009	1153	1	0	0	0	0	1	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	t0010	1085	1	0	0	0	0	1	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	t0011	1132	1	0	0	0	0	1	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	t0012	1132	1	0	0	1	0	0	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	t0013	1132	1	0	1	0	0	0	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	t0014	1132	1	0	0	0	0	1	copy fasta	SLC38A10	chr17	81239811	81300307