JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC38A1_chr12_46178063_46274043	0/0	t0014	6634	6	6	0	0	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0015	6632	5	0	0	5	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0016	6632	5	1	0	4	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0017	6634	4	0	0	4	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0018	6632	4	0	3	0	0	1	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0019	6631	4	3	1	0	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0020	6632	3	0	0	3	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0021	6635	3	0	2	1	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0022	6634	3	2	1	0	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0023	6632	3	1	1	0	1	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0024	6633	3	3	0	0	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0025	6632	2	0	2	0	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0026	6635	2	2	0	0	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0027	6634	2	2	0	0	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0028	6632	2	2	0	0	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0029	6633	2	0	0	2	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0030	6632	2	0	0	2	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0031	6631	2	2	0	0	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0032	6634	2	2	0	0	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0033	6635	2	2	0	0	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0034	6634	2	0	0	2	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0035	6629	2	2	0	0	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0036	6632	2	0	0	2	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0037	6634	2	1	0	0	1	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0038	6634	2	2	0	0	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0039	6632	1	0	1	0	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0040	6632	1	1	0	0	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0041	6635	1	0	1	0	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	1/0	t0042	6634	1	0	0	0	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0043	6633	1	0	0	1	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0044	6633	1	0	1	0	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0045	6633	1	0	0	1	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0046	6632	1	0	1	0	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0047	6632	1	0	0	1	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0048	6632	1	0	0	1	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0049	6632	1	0	0	1	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0050	6632	1	0	0	1	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0051	6635	1	0	0	1	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0052	6634	1	0	0	1	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0053	6634	1	1	0	0	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0054	6634	1	0	1	0	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0055	6634	1	1	0	0	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0056	6633	1	0	0	1	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0057	6633	1	0	1	0	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0058	6632	1	1	0	0	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0059	6632	1	0	0	0	0	1	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0060	6632	1	1	0	0	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0061	6631	1	0	0	0	0	1	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0062	6630	1	1	0	0	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0063	6634	1	0	1	0	0	0	copy fasta	SLC38A1	chr12	46178063	46274043