JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC38A1_chr12_46178063_46274043	0/0	t0114	6634	1	0	0	0	0	1	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0115	6634	1	0	0	0	1	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0116	6634	1	0	0	1	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0117	6634	1	0	0	1	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0118	6635	1	1	0	0	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0119	6631	1	1	0	0	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0120	6632	1	0	0	1	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0121	6632	1	1	0	0	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0122	6630	1	1	0	0	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0123	6632	1	1	0	0	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0124	6629	1	1	0	0	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0125	6632	1	0	0	1	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	t0126	6632	1	0	1	0	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A2_chr12_46353188_46377773	0/0	t0001	3274	276	63	43	143	8	19	copy fasta	SLC38A2	chr12	46353188	46377773
SLC38A2_chr12_46353188_46377773	1/1	t0002	3275	91	10	26	32	8	13	copy fasta	SLC38A2	chr12	46353188	46377773
SLC38A2_chr12_46353188_46377773	0/0	t0003	3274	12	5	0	6	1	0	copy fasta	SLC38A2	chr12	46353188	46377773
SLC38A2_chr12_46353188_46377773	0/0	t0004	3274	4	4	0	0	0	0	copy fasta	SLC38A2	chr12	46353188	46377773
SLC38A2_chr12_46353188_46377773	0/0	t0005	3274	3	3	0	0	0	0	copy fasta	SLC38A2	chr12	46353188	46377773
SLC38A2_chr12_46353188_46377773	0/0	t0006	3249	2	0	2	0	0	0	copy fasta	SLC38A2	chr12	46353188	46377773
SLC38A2_chr12_46353188_46377773	0/0	t0007	3274	2	2	0	0	0	0	copy fasta	SLC38A2	chr12	46353188	46377773
SLC38A2_chr12_46353188_46377773	0/0	t0008	3274	1	0	0	1	0	0	copy fasta	SLC38A2	chr12	46353188	46377773
SLC38A2_chr12_46353188_46377773	0/0	t0009	3274	1	0	1	0	0	0	copy fasta	SLC38A2	chr12	46353188	46377773
SLC38A2_chr12_46353188_46377773	0/0	t0010	3274	1	0	0	0	1	0	copy fasta	SLC38A2	chr12	46353188	46377773
SLC38A2_chr12_46353188_46377773	0/0	t0011	3275	1	0	0	1	0	0	copy fasta	SLC38A2	chr12	46353188	46377773
SLC38A2_chr12_46353188_46377773	0/0	t0012	3274	1	1	0	0	0	0	copy fasta	SLC38A2	chr12	46353188	46377773
SLC38A2_chr12_46353188_46377773	0/0	t0013	3274	1	1	0	0	0	0	copy fasta	SLC38A2	chr12	46353188	46377773
SLC38A2_chr12_46353188_46377773	0/0	t0014	3274	1	0	0	1	0	0	copy fasta	SLC38A2	chr12	46353188	46377773
SLC38A2_chr12_46353188_46377773	0/0	t0015	3274	1	1	0	0	0	0	copy fasta	SLC38A2	chr12	46353188	46377773
SLC38A2_chr12_46353188_46377773	0/0	t0016	3274	1	0	0	0	0	1	copy fasta	SLC38A2	chr12	46353188	46377773
SLC38A2_chr12_46353188_46377773	0/0	t0017	3275	1	0	0	1	0	0	copy fasta	SLC38A2	chr12	46353188	46377773
SLC38A2_chr12_46353188_46377773	0/0	t0018	3274	1	1	0	0	0	0	copy fasta	SLC38A2	chr12	46353188	46377773
SLC38A2_chr12_46353188_46377773	0/0	t0019	3274	1	0	0	0	0	1	copy fasta	SLC38A2	chr12	46353188	46377773
SLC38A2_chr12_46353188_46377773	0/0	t0020	3274	1	1	0	0	0	0	copy fasta	SLC38A2	chr12	46353188	46377773
SLC38A2_chr12_46353188_46377773	0/0	t0021	3275	1	0	0	1	0	0	copy fasta	SLC38A2	chr12	46353188	46377773
SLC38A3_chr3_50200271_50226486	1/1	t0001	1439	264	72	56	88	14	32	copy fasta	SLC38A3	chr3	50200271	50226486
SLC38A3_chr3_50200271_50226486	0/0	t0002	1439	59	0	12	46	0	1	copy fasta	SLC38A3	chr3	50200271	50226486
SLC38A3_chr3_50200271_50226486	0/0	t0003	1439	8	8	0	0	0	0	copy fasta	SLC38A3	chr3	50200271	50226486
SLC38A3_chr3_50200271_50226486	0/0	t0004	1439	4	0	0	4	0	0	copy fasta	SLC38A3	chr3	50200271	50226486
SLC38A3_chr3_50200271_50226486	0/0	t0005	1439	2	2	0	0	0	0	copy fasta	SLC38A3	chr3	50200271	50226486
SLC38A3_chr3_50200271_50226486	0/0	t0006	1439	1	1	0	0	0	0	copy fasta	SLC38A3	chr3	50200271	50226486
SLC38A3_chr3_50200271_50226486	0/0	t0007	1439	1	0	0	1	0	0	copy fasta	SLC38A3	chr3	50200271	50226486
SLC38A3_chr3_50200271_50226486	0/0	t0008	1439	1	0	0	0	0	1	copy fasta	SLC38A3	chr3	50200271	50226486
SLC38A3_chr3_50200271_50226486	0/0	t0009	1439	1	1	0	0	0	0	copy fasta	SLC38A3	chr3	50200271	50226486
SLC38A3_chr3_50200271_50226486	0/0	t0010	1439	1	1	0	0	0	0	copy fasta	SLC38A3	chr3	50200271	50226486
SLC38A3_chr3_50200271_50226486	0/0	t0011	1439	1	0	0	1	0	0	copy fasta	SLC38A3	chr3	50200271	50226486
SLC38A3_chr3_50200271_50226486	0/0	t0012	1439	1	0	0	1	0	0	copy fasta	SLC38A3	chr3	50200271	50226486
SLC38A3_chr3_50200271_50226486	0/0	t0013	1439	1	0	0	1	0	0	copy fasta	SLC38A3	chr3	50200271	50226486
SLC38A3_chr3_50200271_50226486	0/0	t0014	1439	1	1	0	0	0	0	copy fasta	SLC38A3	chr3	50200271	50226486
SLC38A4_chr12_46759761_46830997	0/1	t0001	2340	188	35	41	83	7	21	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	0/0	t0002	2340	104	35	11	57	0	1	copy fasta	SLC38A4	chr12	46759761	46830997