JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC38A4_chr12_46759761_46830997	0/0	t0003	2340	23	9	2	9	0	3	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	0/0	t0004	2340	23	0	2	21	0	0	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	0/0	t0005	2340	20	0	1	9	3	7	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	0/0	t0006	2340	6	6	0	0	0	0	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	0/0	t0007	2340	3	0	2	0	0	1	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	0/0	t0008	2340	3	3	0	0	0	0	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	1/0	t0009	2340	2	1	0	0	0	0	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	0/0	t0010	2340	2	2	0	0	0	0	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	0/0	t0011	2340	1	0	0	1	0	0	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	0/0	t0012	2340	1	0	0	0	0	1	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	0/0	t0013	2340	1	0	1	0	0	0	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	0/0	t0014	2340	1	0	0	1	0	0	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	0/0	t0015	2340	1	1	0	0	0	0	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	0/0	t0016	2340	1	1	0	0	0	0	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	0/0	t0017	2340	1	0	0	1	0	0	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	0/0	t0018	2340	1	1	0	0	0	0	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	0/0	t0019	2340	1	1	0	0	0	0	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	0/0	t0020	2340	1	1	0	0	0	0	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A5_chrX_48453544_48475260	1/0	t0001	571	134	26	19	73	2	13	copy fasta	SLC38A5	chrX	48453544	48475260
SLC38A5_chrX_48453544_48475260	0/0	t0002	574	124	23	29	47	5	20	copy fasta	SLC38A5	chrX	48453544	48475260
SLC38A5_chrX_48453544_48475260	0/1	t0003	577	17	8	3	3	1	1	copy fasta	SLC38A5	chrX	48453544	48475260
SLC38A5_chrX_48453544_48475260	0/0	t0004	575	9	8	1	0	0	0	copy fasta	SLC38A5	chrX	48453544	48475260
SLC38A5_chrX_48453544_48475260	0/0	t0005	580	6	4	2	0	0	0	copy fasta	SLC38A5	chrX	48453544	48475260
SLC38A5_chrX_48453544_48475260	0/0	t0006	578	5	5	0	0	0	0	copy fasta	SLC38A5	chrX	48453544	48475260
SLC38A5_chrX_48453544_48475260	0/0	t0007	565	5	0	2	3	0	0	copy fasta	SLC38A5	chrX	48453544	48475260
SLC38A5_chrX_48453544_48475260	0/0	t0008	568	4	1	1	1	1	0	copy fasta	SLC38A5	chrX	48453544	48475260
SLC38A5_chrX_48453544_48475260	0/0	t0009	570	1	0	0	1	0	0	copy fasta	SLC38A5	chrX	48453544	48475260
SLC38A5_chrX_48453544_48475260	0/0	t0010	571	1	0	0	1	0	0	copy fasta	SLC38A5	chrX	48453544	48475260
SLC38A5_chrX_48453544_48475260	0/0	t0011	574	1	1	0	0	0	0	copy fasta	SLC38A5	chrX	48453544	48475260
SLC38A5_chrX_48453544_48475260	0/0	t0012	571	1	0	0	1	0	0	copy fasta	SLC38A5	chrX	48453544	48475260
SLC38A5_chrX_48453544_48475260	0/0	t0013	577	1	0	1	0	0	0	copy fasta	SLC38A5	chrX	48453544	48475260
SLC38A5_chrX_48453544_48475260	0/0	t0014	570	1	0	0	1	0	0	copy fasta	SLC38A5	chrX	48453544	48475260
SLC38A5_chrX_48453544_48475260	0/0	t0015	570	1	0	0	1	0	0	copy fasta	SLC38A5	chrX	48453544	48475260
SLC38A5_chrX_48453544_48475260	0/0	t0016	575	1	0	0	1	0	0	copy fasta	SLC38A5	chrX	48453544	48475260
SLC38A6_chr14_60976245_61057630	0/1	t0001	235	237	50	43	110	8	25	copy fasta	SLC38A6	chr14	60976245	61057630
SLC38A6_chr14_60976245_61057630	1/0	t0002	235	82	10	8	52	0	11	copy fasta	SLC38A6	chr14	60976245	61057630
SLC38A6_chr14_60976245_61057630	0/0	t0003	235	1	0	1	0	0	0	copy fasta	SLC38A6	chr14	60976245	61057630
SLC38A7_chr16_58660109_58689770	0/0	t0001	2669	173	25	19	96	8	25	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/1	t0002	2670	66	11	7	39	0	8	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	t0003	2670	31	2	1	20	3	5	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	t0004	2669	18	17	1	0	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	t0005	2668	12	1	7	0	2	2	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	t0006	2670	10	0	6	0	1	3	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	t0007	2669	7	7	0	0	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	t0008	2670	7	7	0	0	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	t0009	2669	5	0	2	3	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	t0010	2669	4	4	0	0	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	t0011	2671	4	0	1	2	0	1	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	t0012	2670	4	0	0	4	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	t0013	2670	3	2	1	0	0	0	copy fasta	SLC38A7	chr16	58660109	58689770