Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BCLAF3_chrX_19907860_19996061	0/0	t0033	4637	1	0	0	1	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0034	4636	1	0	1	0	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0035	4634	1	1	0	0	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0036	4633	1	0	0	0	0	1	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0037	4633	1	1	0	0	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0038	4630	1	1	0	0	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0039	4630	1	1	0	0	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0040	4625	1	1	0	0	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0041	4625	1	1	0	0	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0042	4625	1	1	0	0	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0043	4623	1	1	0	0	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0044	4617	1	1	0	0	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0045	4618	1	1	0	0	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0046	4618	1	1	0	0	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0047	4587	1	0	0	1	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0048	4632	1	0	0	1	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0049	4624	1	0	0	1	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0050	4628	1	0	0	1	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0051	4628	1	0	0	0	0	1	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0052	4628	1	0	0	0	0	1	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0053	4628	1	0	1	0	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0054	4629	1	0	0	1	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0055	4629	1	0	0	1	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0056	4628	1	0	1	0	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0057	4628	1	0	0	0	0	1	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0058	4632	1	0	0	1	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0059	4628	1	0	0	0	0	1	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0060	4619	1	0	0	1	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0061	4610	1	0	0	0	0	1	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0062	4601	1	0	0	1	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0063	4631	1	0	1	0	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0064	4628	1	0	1	0	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0065	4630	1	0	0	1	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	t0066	4628	1	0	0	1	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCO1_chr16_81233689_81296142	1/1	t0001	786	392	94	68	166	18	44	copy fasta	BCO1	chr16	81233689	81296142
BCO1_chr16_81233689_81296142	0/0	t0002	786	10	0	8	2	0	0	copy fasta	BCO1	chr16	81233689	81296142
BCO2_chr11_112170512_112223946	1/1	t0001	1163	350	72	78	148	12	38	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	0/0	t0002	1163	16	14	2	0	0	0	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	0/0	t0003	1163	5	0	0	5	0	0	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	0/0	t0004	1163	2	2	0	0	0	0	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	0/0	t0005	1163	2	0	0	2	0	0	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	0/0	t0006	1163	1	1	0	0	0	0	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	0/0	t0007	1163	1	1	0	0	0	0	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	0/0	t0008	1163	1	1	0	0	0	0	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	0/0	t0009	1163	1	1	0	0	0	0	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	0/0	t0010	1163	1	0	0	1	0	0	copy fasta	BCO2	chr11	112170512	112223946
BCORL1_chrX_129977635_130063071	1/1	t0001	2108	155	30	32	70	5	16	copy fasta	BCORL1	chrX	129977635	130063071
BCORL1_chrX_129977635_130063071	0/0	t0002	2108	26	24	2	0	0	0	copy fasta	BCORL1	chrX	129977635	130063071
BCORL1_chrX_129977635_130063071	0/0	t0003	2108	4	0	0	4	0	0	copy fasta	BCORL1	chrX	129977635	130063071
BCORL1_chrX_129977635_130063071	0/0	t0004	2108	2	2	0	0	0	0	copy fasta	BCORL1	chrX	129977635	130063071