JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC38A7_chr16_58660109_58689770	0/0	t0014	2668	3	0	0	2	0	1	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	t0015	2666	3	0	3	0	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	t0016	2669	3	0	0	3	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	t0017	2670	2	2	0	0	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	t0018	2669	2	2	0	0	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	t0019	2671	2	0	0	2	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	t0020	2669	2	0	0	2	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	t0021	2669	2	0	1	1	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	t0022	2669	2	2	0	0	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	t0023	2668	2	0	0	1	0	1	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	t0024	2671	2	0	0	2	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	t0025	2670	2	2	0	0	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	t0026	2671	1	1	0	0	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	t0027	2670	1	1	0	0	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	t0028	2669	1	1	0	0	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	t0029	2668	1	1	0	0	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	t0030	2670	1	0	0	0	0	1	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	t0031	2646	1	1	0	0	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	t0032	2671	1	0	1	0	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	t0033	2645	1	1	0	0	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	t0034	2670	1	0	1	0	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	t0035	2669	1	1	0	0	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	t0036	2669	1	1	0	0	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	t0037	2671	1	0	1	0	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	1/0	t0038	2670	1	0	0	0	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	t0039	2693	1	0	0	1	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	t0040	2671	1	1	0	0	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	t0041	2668	1	0	1	0	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	t0042	2668	1	0	1	0	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	t0043	2671	1	0	1	0	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	t0044	2669	1	0	0	0	0	1	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	t0045	2668	1	0	1	0	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	t0046	2668	1	1	0	0	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A8_chr16_84004667_84047795	1/1	t0001	365	272	32	61	118	17	42	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	t0002	365	94	43	9	39	1	2	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	t0003	365	51	9	5	35	0	2	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	t0004	365	14	3	1	9	0	1	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	t0005	365	5	4	1	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	t0006	365	4	0	4	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	t0007	365	2	1	1	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	t0008	365	1	1	0	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	t0009	365	1	1	0	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	t0010	365	1	0	0	0	0	1	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	t0011	365	1	1	0	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	t0012	365	1	1	0	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	t0013	365	1	0	0	1	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A9_chr5_55620848_55717324	1/1	t0001	837	310	64	51	156	10	27	copy fasta	SLC38A9	chr5	55620848	55717324
SLC38A9_chr5_55620848_55717324	0/0	t0002	833	18	9	2	6	0	1	copy fasta	SLC38A9	chr5	55620848	55717324
SLC38A9_chr5_55620848_55717324	0/0	t0003	837	17	14	1	0	0	2	copy fasta	SLC38A9	chr5	55620848	55717324
SLC38A9_chr5_55620848_55717324	0/0	t0004	833	2	2	0	0	0	0	copy fasta	SLC38A9	chr5	55620848	55717324