JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC39A14_chr8_22362278_22427736	0/0	t0004	3185	22	19	3	0	0	0	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	0/0	t0005	3185	13	11	1	1	0	0	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	0/0	t0006	3185	12	12	0	0	0	0	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	0/0	t0007	3185	9	0	0	8	0	1	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	0/0	t0008	3185	5	5	0	0	0	0	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	0/0	t0009	3185	4	0	0	4	0	0	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	0/0	t0010	3188	3	3	0	0	0	0	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	0/0	t0011	3185	3	3	0	0	0	0	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	0/0	t0012	3185	3	3	0	0	0	0	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	0/0	t0013	3185	3	3	0	0	0	0	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	0/0	t0014	3185	2	2	0	0	0	0	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	0/0	t0015	3185	2	0	0	2	0	0	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	0/0	t0016	3188	2	0	0	2	0	0	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	0/0	t0017	3185	1	1	0	0	0	0	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	0/0	t0018	3188	1	0	0	1	0	0	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	0/0	t0019	3185	1	0	0	1	0	0	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	0/0	t0020	3188	1	0	0	0	0	1	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	0/0	t0021	3188	1	1	0	0	0	0	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	0/0	t0022	3188	1	0	0	1	0	0	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	0/0	t0023	3185	1	1	0	0	0	0	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	0/0	t0024	3185	1	0	1	0	0	0	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	0/0	t0025	3188	1	0	0	0	0	1	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	0/0	t0026	3185	1	1	0	0	0	0	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	0/0	t0027	3185	1	1	0	0	0	0	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	0/0	t0028	3188	1	0	1	0	0	0	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	0/0	t0029	3185	1	1	0	0	0	0	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A1_chr1_153954110_153968537	1/1	t0001	1064	248	64	34	111	8	29	copy fasta	SLC39A1	chr1	153954110	153968537
SLC39A1_chr1_153954110_153968537	0/0	t0002	1064	116	11	27	66	1	11	copy fasta	SLC39A1	chr1	153954110	153968537
SLC39A1_chr1_153954110_153968537	0/0	t0003	1064	8	7	1	0	0	0	copy fasta	SLC39A1	chr1	153954110	153968537
SLC39A1_chr1_153954110_153968537	0/0	t0004	1064	8	0	3	0	3	2	copy fasta	SLC39A1	chr1	153954110	153968537
SLC39A1_chr1_153954110_153968537	0/0	t0005	1063	5	4	1	0	0	0	copy fasta	SLC39A1	chr1	153954110	153968537
SLC39A1_chr1_153954110_153968537	0/0	t0006	1064	3	0	2	0	1	0	copy fasta	SLC39A1	chr1	153954110	153968537
SLC39A1_chr1_153954110_153968537	0/0	t0007	1064	2	0	0	0	1	1	copy fasta	SLC39A1	chr1	153954110	153968537
SLC39A1_chr1_153954110_153968537	0/0	t0008	1064	2	0	2	0	0	0	copy fasta	SLC39A1	chr1	153954110	153968537
SLC39A1_chr1_153954110_153968537	0/0	t0009	1064	2	0	2	0	0	0	copy fasta	SLC39A1	chr1	153954110	153968537
SLC39A1_chr1_153954110_153968537	0/0	t0010	1064	1	0	0	1	0	0	copy fasta	SLC39A1	chr1	153954110	153968537
SLC39A1_chr1_153954110_153968537	0/0	t0011	1064	1	0	0	0	0	1	copy fasta	SLC39A1	chr1	153954110	153968537
SLC39A2_chr14_20994293_21006871	1/1	t0001	447	457	90	85	220	16	44	copy fasta	SLC39A2	chr14	20994293	21006871
SLC39A2_chr14_20994293_21006871	0/0	t0002	447	7	7	0	0	0	0	copy fasta	SLC39A2	chr14	20994293	21006871
SLC39A2_chr14_20994293_21006871	0/0	t0003	447	1	0	1	0	0	0	copy fasta	SLC39A2	chr14	20994293	21006871
SLC39A2_chr14_20994293_21006871	0/0	t0004	447	1	1	0	0	0	0	copy fasta	SLC39A2	chr14	20994293	21006871
SLC39A3_chr19_2727524_2745017	1/1	t0001	423	300	63	61	138	16	20	copy fasta	SLC39A3	chr19	2727524	2745017
SLC39A3_chr19_2727524_2745017	0/0	t0002	423	81	11	9	52	1	8	copy fasta	SLC39A3	chr19	2727524	2745017
SLC39A3_chr19_2727524_2745017	0/0	t0003	423	11	3	3	0	1	4	copy fasta	SLC39A3	chr19	2727524	2745017
SLC39A3_chr19_2727524_2745017	0/0	t0004	408	9	9	0	0	0	0	copy fasta	SLC39A3	chr19	2727524	2745017
SLC39A3_chr19_2727524_2745017	0/0	t0005	423	3	2	1	0	0	0	copy fasta	SLC39A3	chr19	2727524	2745017
SLC39A3_chr19_2727524_2745017	0/0	t0006	423	2	0	0	2	0	0	copy fasta	SLC39A3	chr19	2727524	2745017
SLC39A3_chr19_2727524_2745017	0/0	t0007	423	2	2	0	0	0	0	copy fasta	SLC39A3	chr19	2727524	2745017
SLC39A3_chr19_2727524_2745017	0/0	t0008	423	1	1	0	0	0	0	copy fasta	SLC39A3	chr19	2727524	2745017
SLC39A3_chr19_2727524_2745017	0/0	t0009	423	1	1	0	0	0	0	copy fasta	SLC39A3	chr19	2727524	2745017