JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC39A4_chr8_144407414_144421844	1/1	t0001	180	365	98	70	137	16	42	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	t0002	180	57	0	10	47	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A5_chr12_56225051_56242846	0/1	t0001	359	329	36	68	172	18	34	copy fasta	SLC39A5	chr12	56225051	56242846
SLC39A5_chr12_56225051_56242846	0/0	t0002	358	47	44	1	0	0	2	copy fasta	SLC39A5	chr12	56225051	56242846
SLC39A5_chr12_56225051_56242846	1/0	t0003	358	5	4	0	0	0	0	copy fasta	SLC39A5	chr12	56225051	56242846
SLC39A5_chr12_56225051_56242846	0/0	t0004	359	5	5	0	0	0	0	copy fasta	SLC39A5	chr12	56225051	56242846
SLC39A5_chr12_56225051_56242846	0/0	t0005	359	4	3	1	0	0	0	copy fasta	SLC39A5	chr12	56225051	56242846
SLC39A5_chr12_56225051_56242846	0/0	t0006	359	2	0	0	2	0	0	copy fasta	SLC39A5	chr12	56225051	56242846
SLC39A6_chr18_36103531_36134340	0/0	t0001	1299	173	19	15	109	4	26	copy fasta	SLC39A6	chr18	36103531	36134340
SLC39A6_chr18_36103531_36134340	1/1	t0002	1299	110	32	23	40	6	7	copy fasta	SLC39A6	chr18	36103531	36134340
SLC39A6_chr18_36103531_36134340	0/0	t0003	1299	106	32	23	42	2	7	copy fasta	SLC39A6	chr18	36103531	36134340
SLC39A6_chr18_36103531_36134340	0/0	t0004	1299	7	0	0	7	0	0	copy fasta	SLC39A6	chr18	36103531	36134340
SLC39A6_chr18_36103531_36134340	0/0	t0005	1299	3	0	0	3	0	0	copy fasta	SLC39A6	chr18	36103531	36134340
SLC39A6_chr18_36103531_36134340	0/0	t0006	1299	3	2	1	0	0	0	copy fasta	SLC39A6	chr18	36103531	36134340
SLC39A6_chr18_36103531_36134340	0/0	t0007	1299	2	2	0	0	0	0	copy fasta	SLC39A6	chr18	36103531	36134340
SLC39A6_chr18_36103531_36134340	0/0	t0008	1299	1	1	0	0	0	0	copy fasta	SLC39A6	chr18	36103531	36134340
SLC39A6_chr18_36103531_36134340	0/0	t0009	1299	1	1	0	0	0	0	copy fasta	SLC39A6	chr18	36103531	36134340
SLC39A6_chr18_36103531_36134340	0/0	t0010	1299	1	1	0	0	0	0	copy fasta	SLC39A6	chr18	36103531	36134340
SLC39A6_chr18_36103531_36134340	0/0	t0011	1299	1	1	0	0	0	0	copy fasta	SLC39A6	chr18	36103531	36134340
SLC39A6_chr18_36103531_36134340	0/0	t0012	1299	1	0	0	1	0	0	copy fasta	SLC39A6	chr18	36103531	36134340
SLC39A6_chr18_36103531_36134340	0/0	t0013	1299	1	1	0	0	0	0	copy fasta	SLC39A6	chr18	36103531	36134340
SLC39A7_chr6_33195867_33209437	0/1	t0001	1004	382	91	78	153	17	42	copy fasta	SLC39A7	chr6	33195867	33209437
SLC39A7_chr6_33195867_33209437	0/0	t0002	1004	5	0	0	5	0	0	copy fasta	SLC39A7	chr6	33195867	33209437
SLC39A7_chr6_33195867_33209437	0/0	t0003	1004	1	0	0	0	0	1	copy fasta	SLC39A7	chr6	33195867	33209437
SLC39A7_chr6_33195867_33209437	0/0	t0004	1004	1	0	0	0	0	1	copy fasta	SLC39A7	chr6	33195867	33209437
SLC39A7_chr6_33195867_33209437	0/0	t0005	1004	1	0	0	0	1	0	copy fasta	SLC39A7	chr6	33195867	33209437
SLC39A7_chr6_33195867_33209437	0/0	t0006	1004	1	1	0	0	0	0	copy fasta	SLC39A7	chr6	33195867	33209437
SLC39A7_chr6_33195867_33209437	0/0	t0007	1004	1	1	0	0	0	0	copy fasta	SLC39A7	chr6	33195867	33209437
SLC39A7_chr6_33195867_33209437	0/0	t0008	1004	1	1	0	0	0	0	copy fasta	SLC39A7	chr6	33195867	33209437
SLC39A7_chr6_33195867_33209437	0/0	t0009	1004	1	1	0	0	0	0	copy fasta	SLC39A7	chr6	33195867	33209437
SLC39A7_chr6_33195867_33209437	0/0	t0010	1004	1	1	0	0	0	0	copy fasta	SLC39A7	chr6	33195867	33209437
SLC39A8_chr4_102256666_102350482	0/0	t0001	1770	105	21	31	32	5	16	copy fasta	SLC39A8	chr4	102256666	102350482
SLC39A8_chr4_102256666_102350482	1/1	t0002	1770	63	0	22	28	4	7	copy fasta	SLC39A8	chr4	102256666	102350482
SLC39A8_chr4_102256666_102350482	0/0	t0003	1770	41	20	6	6	3	6	copy fasta	SLC39A8	chr4	102256666	102350482
SLC39A8_chr4_102256666_102350482	0/0	t0004	1770	27	26	1	0	0	0	copy fasta	SLC39A8	chr4	102256666	102350482
SLC39A8_chr4_102256666_102350482	0/0	t0005	1770	10	8	2	0	0	0	copy fasta	SLC39A8	chr4	102256666	102350482
SLC39A8_chr4_102256666_102350482	0/0	t0006	1770	8	8	0	0	0	0	copy fasta	SLC39A8	chr4	102256666	102350482
SLC39A8_chr4_102256666_102350482	0/0	t0007	1770	4	4	0	0	0	0	copy fasta	SLC39A8	chr4	102256666	102350482
SLC39A8_chr4_102256666_102350482	0/0	t0008	1770	4	2	2	0	0	0	copy fasta	SLC39A8	chr4	102256666	102350482
SLC39A8_chr4_102256666_102350482	0/0	t0009	1770	2	2	0	0	0	0	copy fasta	SLC39A8	chr4	102256666	102350482
SLC39A8_chr4_102256666_102350482	0/0	t0010	1770	1	0	0	0	0	1	copy fasta	SLC39A8	chr4	102256666	102350482
SLC39A8_chr4_102256666_102350482	0/0	t0011	1770	1	1	0	0	0	0	copy fasta	SLC39A8	chr4	102256666	102350482
SLC39A9_chr14_69393692_69467390	1/0	t0001	4476	147	19	20	81	8	18	copy fasta	SLC39A9	chr14	69393692	69467390
SLC39A9_chr14_69393692_69467390	0/1	t0002	4475	85	30	13	25	6	10	copy fasta	SLC39A9	chr14	69393692	69467390
SLC39A9_chr14_69393692_69467390	0/0	t0003	4475	18	4	4	1	3	6	copy fasta	SLC39A9	chr14	69393692	69467390
SLC39A9_chr14_69393692_69467390	0/0	t0004	4475	15	0	1	12	1	1	copy fasta	SLC39A9	chr14	69393692	69467390
SLC39A9_chr14_69393692_69467390	0/0	t0005	4476	14	13	1	0	0	0	copy fasta	SLC39A9	chr14	69393692	69467390
SLC39A9_chr14_69393692_69467390	0/0	t0006	4474	6	4	2	0	0	0	copy fasta	SLC39A9	chr14	69393692	69467390
SLC39A9_chr14_69393692_69467390	0/0	t0007	4476	6	6	0	0	0	0	copy fasta	SLC39A9	chr14	69393692	69467390
SLC39A9_chr14_69393692_69467390	0/0	t0008	4476	5	4	1	0	0	0	copy fasta	SLC39A9	chr14	69393692	69467390