JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC39A9_chr14_69393692_69467390	0/0	t0009	4475	3	0	0	3	0	0	copy fasta	SLC39A9	chr14	69393692	69467390
SLC39A9_chr14_69393692_69467390	0/0	t0010	4476	3	0	0	3	0	0	copy fasta	SLC39A9	chr14	69393692	69467390
SLC39A9_chr14_69393692_69467390	0/0	t0011	4474	2	0	0	2	0	0	copy fasta	SLC39A9	chr14	69393692	69467390
SLC39A9_chr14_69393692_69467390	0/0	t0012	4476	2	2	0	0	0	0	copy fasta	SLC39A9	chr14	69393692	69467390
SLC39A9_chr14_69393692_69467390	0/0	t0013	4475	2	2	0	0	0	0	copy fasta	SLC39A9	chr14	69393692	69467390
SLC39A9_chr14_69393692_69467390	0/0	t0014	4476	1	0	0	1	0	0	copy fasta	SLC39A9	chr14	69393692	69467390
SLC39A9_chr14_69393692_69467390	0/0	t0015	4475	1	0	0	0	0	1	copy fasta	SLC39A9	chr14	69393692	69467390
SLC39A9_chr14_69393692_69467390	0/0	t0016	4475	1	0	0	1	0	0	copy fasta	SLC39A9	chr14	69393692	69467390
SLC39A9_chr14_69393692_69467390	0/0	t0017	4475	1	0	1	0	0	0	copy fasta	SLC39A9	chr14	69393692	69467390
SLC39A9_chr14_69393692_69467390	0/0	t0018	4475	1	0	1	0	0	0	copy fasta	SLC39A9	chr14	69393692	69467390
SLC39A9_chr14_69393692_69467390	0/0	t0019	4475	1	1	0	0	0	0	copy fasta	SLC39A9	chr14	69393692	69467390
SLC39A9_chr14_69393692_69467390	0/0	t0020	4475	1	0	0	1	0	0	copy fasta	SLC39A9	chr14	69393692	69467390
SLC39A9_chr14_69393692_69467390	0/0	t0021	4475	1	0	1	0	0	0	copy fasta	SLC39A9	chr14	69393692	69467390
SLC39A9_chr14_69393692_69467390	0/0	t0022	4475	1	1	0	0	0	0	copy fasta	SLC39A9	chr14	69393692	69467390
SLC39A9_chr14_69393692_69467390	0/0	t0023	4475	1	0	0	1	0	0	copy fasta	SLC39A9	chr14	69393692	69467390
SLC39A9_chr14_69393692_69467390	0/0	t0024	4476	1	1	0	0	0	0	copy fasta	SLC39A9	chr14	69393692	69467390
SLC39A9_chr14_69393692_69467390	0/0	t0025	4476	1	0	1	0	0	0	copy fasta	SLC39A9	chr14	69393692	69467390
SLC39A9_chr14_69393692_69467390	0/0	t0026	4476	1	0	0	1	0	0	copy fasta	SLC39A9	chr14	69393692	69467390
SLC39A9_chr14_69393692_69467390	0/0	t0027	4476	1	1	0	0	0	0	copy fasta	SLC39A9	chr14	69393692	69467390
SLC39A9_chr14_69393692_69467390	0/0	t0028	4476	1	0	0	0	0	1	copy fasta	SLC39A9	chr14	69393692	69467390
SLC39A9_chr14_69393692_69467390	0/0	t0029	4475	1	1	0	0	0	0	copy fasta	SLC39A9	chr14	69393692	69467390
SLC39A9_chr14_69393692_69467390	0/0	t0030	4476	1	1	0	0	0	0	copy fasta	SLC39A9	chr14	69393692	69467390
SLC39A9_chr14_69393692_69467390	0/0	t0031	4475	1	0	0	0	0	1	copy fasta	SLC39A9	chr14	69393692	69467390
SLC3A1_chr2_44270480_44326494	0/1	t0001	912	190	54	39	64	11	21	copy fasta	SLC3A1	chr2	44270480	44326494
SLC3A1_chr2_44270480_44326494	1/0	t0002	912	103	7	21	67	2	5	copy fasta	SLC3A1	chr2	44270480	44326494
SLC3A1_chr2_44270480_44326494	0/0	t0003	912	28	7	9	2	1	9	copy fasta	SLC3A1	chr2	44270480	44326494
SLC3A1_chr2_44270480_44326494	0/0	t0004	912	20	19	1	0	0	0	copy fasta	SLC3A1	chr2	44270480	44326494
SLC3A1_chr2_44270480_44326494	0/0	t0005	912	4	2	2	0	0	0	copy fasta	SLC3A1	chr2	44270480	44326494
SLC3A1_chr2_44270480_44326494	0/0	t0006	912	2	2	0	0	0	0	copy fasta	SLC3A1	chr2	44270480	44326494
SLC3A1_chr2_44270480_44326494	0/0	t0007	912	1	1	0	0	0	0	copy fasta	SLC3A1	chr2	44270480	44326494
SLC3A1_chr2_44270480_44326494	0/0	t0008	912	1	1	0	0	0	0	copy fasta	SLC3A1	chr2	44270480	44326494
SLC3A1_chr2_44270480_44326494	0/0	t0009	912	1	1	0	0	0	0	copy fasta	SLC3A1	chr2	44270480	44326494
SLC3A1_chr2_44270480_44326494	0/0	t0010	912	1	0	0	0	0	1	copy fasta	SLC3A1	chr2	44270480	44326494
SLC3A1_chr2_44270480_44326494	0/0	t0011	912	1	0	0	1	0	0	copy fasta	SLC3A1	chr2	44270480	44326494
SLC3A1_chr2_44270480_44326494	0/0	t0012	912	1	1	0	0	0	0	copy fasta	SLC3A1	chr2	44270480	44326494
SLC3A1_chr2_44270480_44326494	0/0	t0013	912	1	1	0	0	0	0	copy fasta	SLC3A1	chr2	44270480	44326494
SLC3A2_chr11_62875896_62893860	1/1	t0001	296	425	94	75	196	16	42	copy fasta	SLC3A2	chr11	62875896	62893860
SLC3A2_chr11_62875896_62893860	0/0	t0002	296	3	0	1	0	0	2	copy fasta	SLC3A2	chr11	62875896	62893860
SLC3A2_chr11_62875896_62893860	0/0	t0003	296	1	0	0	1	0	0	copy fasta	SLC3A2	chr11	62875896	62893860
SLC3A2_chr11_62875896_62893860	0/0	t0004	296	1	0	0	1	0	0	copy fasta	SLC3A2	chr11	62875896	62893860
SLC40A1_chr2_189555590_189585786	0/1	t0001	1618	161	10	36	84	8	22	copy fasta	SLC40A1	chr2	189555590	189585786
SLC40A1_chr2_189555590_189585786	1/0	t0002	1615	108	46	20	22	5	14	copy fasta	SLC40A1	chr2	189555590	189585786
SLC40A1_chr2_189555590_189585786	0/0	t0003	1615	18	0	4	4	3	7	copy fasta	SLC40A1	chr2	189555590	189585786
SLC40A1_chr2_189555590_189585786	0/0	t0004	1621	17	4	1	12	0	0	copy fasta	SLC40A1	chr2	189555590	189585786
SLC40A1_chr2_189555590_189585786	0/0	t0005	1621	9	9	0	0	0	0	copy fasta	SLC40A1	chr2	189555590	189585786
SLC40A1_chr2_189555590_189585786	0/0	t0006	1618	8	8	0	0	0	0	copy fasta	SLC40A1	chr2	189555590	189585786
SLC40A1_chr2_189555590_189585786	0/0	t0007	1615	6	6	0	0	0	0	copy fasta	SLC40A1	chr2	189555590	189585786
SLC40A1_chr2_189555590_189585786	0/0	t0008	1616	5	5	0	0	0	0	copy fasta	SLC40A1	chr2	189555590	189585786
SLC40A1_chr2_189555590_189585786	0/0	t0009	1615	4	3	1	0	0	0	copy fasta	SLC40A1	chr2	189555590	189585786
SLC40A1_chr2_189555590_189585786	0/0	t0010	1615	2	2	0	0	0	0	copy fasta	SLC40A1	chr2	189555590	189585786