JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC40A1_chr2_189555590_189585786	0/0	t0011	1615	2	2	0	0	0	0	copy fasta	SLC40A1	chr2	189555590	189585786
SLC40A1_chr2_189555590_189585786	0/0	t0012	1615	1	0	0	1	0	0	copy fasta	SLC40A1	chr2	189555590	189585786
SLC40A1_chr2_189555590_189585786	0/0	t0013	1615	1	0	0	1	0	0	copy fasta	SLC40A1	chr2	189555590	189585786
SLC40A1_chr2_189555590_189585786	0/0	t0014	1615	1	1	0	0	0	0	copy fasta	SLC40A1	chr2	189555590	189585786
SLC40A1_chr2_189555590_189585786	0/0	t0015	1615	1	0	0	1	0	0	copy fasta	SLC40A1	chr2	189555590	189585786
SLC40A1_chr2_189555590_189585786	0/0	t0016	1618	1	0	0	0	0	1	copy fasta	SLC40A1	chr2	189555590	189585786
SLC40A1_chr2_189555590_189585786	0/0	t0017	1621	1	0	0	1	0	0	copy fasta	SLC40A1	chr2	189555590	189585786
SLC41A1_chr1_205784095_205818198	1/0	t0001	3476	152	43	33	58	3	14	copy fasta	SLC41A1	chr1	205784095	205818198
SLC41A1_chr1_205784095_205818198	0/1	t0002	3476	121	16	11	69	5	19	copy fasta	SLC41A1	chr1	205784095	205818198
SLC41A1_chr1_205784095_205818198	0/0	t0003	3476	38	1	3	33	0	1	copy fasta	SLC41A1	chr1	205784095	205818198
SLC41A1_chr1_205784095_205818198	0/0	t0004	3476	23	1	18	0	3	1	copy fasta	SLC41A1	chr1	205784095	205818198
SLC41A1_chr1_205784095_205818198	0/0	t0005	3476	10	0	0	10	0	0	copy fasta	SLC41A1	chr1	205784095	205818198
SLC41A1_chr1_205784095_205818198	0/0	t0006	3476	10	9	1	0	0	0	copy fasta	SLC41A1	chr1	205784095	205818198
SLC41A1_chr1_205784095_205818198	0/0	t0007	3476	9	6	1	0	2	0	copy fasta	SLC41A1	chr1	205784095	205818198
SLC41A1_chr1_205784095_205818198	0/0	t0008	3476	6	6	0	0	0	0	copy fasta	SLC41A1	chr1	205784095	205818198
SLC41A1_chr1_205784095_205818198	0/0	t0009	3476	4	0	0	4	0	0	copy fasta	SLC41A1	chr1	205784095	205818198
SLC41A1_chr1_205784095_205818198	0/0	t0010	3476	4	4	0	0	0	0	copy fasta	SLC41A1	chr1	205784095	205818198
SLC41A1_chr1_205784095_205818198	0/0	t0011	3476	3	0	1	0	1	1	copy fasta	SLC41A1	chr1	205784095	205818198
SLC41A1_chr1_205784095_205818198	0/0	t0012	3476	3	0	3	0	0	0	copy fasta	SLC41A1	chr1	205784095	205818198
SLC41A1_chr1_205784095_205818198	0/0	t0013	3476	2	0	1	0	0	1	copy fasta	SLC41A1	chr1	205784095	205818198
SLC41A1_chr1_205784095_205818198	0/0	t0014	3476	2	2	0	0	0	0	copy fasta	SLC41A1	chr1	205784095	205818198
SLC41A1_chr1_205784095_205818198	0/0	t0015	3476	2	2	0	0	0	0	copy fasta	SLC41A1	chr1	205784095	205818198
SLC41A1_chr1_205784095_205818198	0/0	t0016	3476	1	0	0	1	0	0	copy fasta	SLC41A1	chr1	205784095	205818198
SLC41A1_chr1_205784095_205818198	0/0	t0017	3476	1	0	0	1	0	0	copy fasta	SLC41A1	chr1	205784095	205818198
SLC41A1_chr1_205784095_205818198	0/0	t0018	3476	1	1	0	0	0	0	copy fasta	SLC41A1	chr1	205784095	205818198
SLC41A1_chr1_205784095_205818198	0/0	t0019	3476	1	0	0	0	0	1	copy fasta	SLC41A1	chr1	205784095	205818198
SLC41A1_chr1_205784095_205818198	0/0	t0020	3476	1	0	0	1	0	0	copy fasta	SLC41A1	chr1	205784095	205818198
SLC41A1_chr1_205784095_205818198	0/0	t0021	3476	1	0	0	0	0	1	copy fasta	SLC41A1	chr1	205784095	205818198
SLC41A1_chr1_205784095_205818198	0/0	t0022	3476	1	0	0	0	0	1	copy fasta	SLC41A1	chr1	205784095	205818198
SLC41A1_chr1_205784095_205818198	0/0	t0023	3476	1	0	0	1	0	0	copy fasta	SLC41A1	chr1	205784095	205818198
SLC41A1_chr1_205784095_205818198	0/0	t0024	3476	1	1	0	0	0	0	copy fasta	SLC41A1	chr1	205784095	205818198
SLC41A1_chr1_205784095_205818198	0/0	t0025	3476	1	0	0	1	0	0	copy fasta	SLC41A1	chr1	205784095	205818198
SLC41A1_chr1_205784095_205818198	0/0	t0026	3476	1	1	0	0	0	0	copy fasta	SLC41A1	chr1	205784095	205818198
SLC41A1_chr1_205784095_205818198	0/0	t0027	3476	1	1	0	0	0	0	copy fasta	SLC41A1	chr1	205784095	205818198
SLC41A1_chr1_205784095_205818198	0/0	t0028	3476	1	0	0	1	0	0	copy fasta	SLC41A1	chr1	205784095	205818198
SLC41A2_chr12_104796801_104963290	0/0	t0001	3723	71	10	20	33	1	7	copy fasta	SLC41A2	chr12	104796801	104963290
SLC41A2_chr12_104796801_104963290	1/1	t0002	3722	59	2	10	35	2	8	copy fasta	SLC41A2	chr12	104796801	104963290
SLC41A2_chr12_104796801_104963290	0/0	t0003	3713	31	8	5	16	1	1	copy fasta	SLC41A2	chr12	104796801	104963290
SLC41A2_chr12_104796801_104963290	0/0	t0004	3727	30	4	4	22	0	0	copy fasta	SLC41A2	chr12	104796801	104963290
SLC41A2_chr12_104796801_104963290	0/0	t0005	3730	24	0	0	24	0	0	copy fasta	SLC41A2	chr12	104796801	104963290
SLC41A2_chr12_104796801_104963290	0/0	t0006	3717	22	1	4	16	0	1	copy fasta	SLC41A2	chr12	104796801	104963290
SLC41A2_chr12_104796801_104963290	0/0	t0007	3723	10	0	2	5	0	3	copy fasta	SLC41A2	chr12	104796801	104963290
SLC41A2_chr12_104796801_104963290	0/0	t0008	3721	8	7	1	0	0	0	copy fasta	SLC41A2	chr12	104796801	104963290
SLC41A2_chr12_104796801_104963290	0/0	t0009	3722	8	5	3	0	0	0	copy fasta	SLC41A2	chr12	104796801	104963290
SLC41A2_chr12_104796801_104963290	0/0	t0010	3723	8	0	3	0	0	5	copy fasta	SLC41A2	chr12	104796801	104963290
SLC41A2_chr12_104796801_104963290	0/0	t0011	3724	8	4	0	4	0	0	copy fasta	SLC41A2	chr12	104796801	104963290
SLC41A2_chr12_104796801_104963290	0/0	t0012	3730	7	0	2	4	0	1	copy fasta	SLC41A2	chr12	104796801	104963290
SLC41A2_chr12_104796801_104963290	0/0	t0013	3717	7	0	0	6	0	1	copy fasta	SLC41A2	chr12	104796801	104963290
SLC41A2_chr12_104796801_104963290	0/0	t0014	3713	6	0	0	3	0	3	copy fasta	SLC41A2	chr12	104796801	104963290
SLC41A2_chr12_104796801_104963290	0/0	t0015	3717	5	0	0	5	0	0	copy fasta	SLC41A2	chr12	104796801	104963290