JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC41A3_chr3_126001357_126089124	1/0	t0002	719	89	5	12	56	4	11	copy fasta	SLC41A3	chr3	126001357	126089124
SLC41A3_chr3_126001357_126089124	0/0	t0003	715	66	11	10	31	0	14	copy fasta	SLC41A3	chr3	126001357	126089124
SLC41A3_chr3_126001357_126089124	0/0	t0004	719	18	13	5	0	0	0	copy fasta	SLC41A3	chr3	126001357	126089124
SLC41A3_chr3_126001357_126089124	0/0	t0005	719	5	0	4	0	1	0	copy fasta	SLC41A3	chr3	126001357	126089124
SLC41A3_chr3_126001357_126089124	0/0	t0006	719	5	2	3	0	0	0	copy fasta	SLC41A3	chr3	126001357	126089124
SLC41A3_chr3_126001357_126089124	0/0	t0007	719	3	3	0	0	0	0	copy fasta	SLC41A3	chr3	126001357	126089124
SLC41A3_chr3_126001357_126089124	0/0	t0008	719	2	2	0	0	0	0	copy fasta	SLC41A3	chr3	126001357	126089124
SLC41A3_chr3_126001357_126089124	0/0	t0009	715	1	0	0	1	0	0	copy fasta	SLC41A3	chr3	126001357	126089124
SLC41A3_chr3_126001357_126089124	0/0	t0010	719	1	1	0	0	0	0	copy fasta	SLC41A3	chr3	126001357	126089124
SLC41A3_chr3_126001357_126089124	0/0	t0011	719	1	1	0	0	0	0	copy fasta	SLC41A3	chr3	126001357	126089124
SLC41A3_chr3_126001357_126089124	0/0	t0012	746	1	0	0	0	0	1	copy fasta	SLC41A3	chr3	126001357	126089124
SLC43A1_chr11_57479534_57520702	0/1	t0001	835	133	22	28	55	7	20	copy fasta	SLC43A1	chr11	57479534	57520702
SLC43A1_chr11_57479534_57520702	0/0	t0002	835	76	29	13	28	3	3	copy fasta	SLC43A1	chr11	57479534	57520702
SLC43A1_chr11_57479534_57520702	1/0	t0003	835	71	11	26	22	6	5	copy fasta	SLC43A1	chr11	57479534	57520702
SLC43A1_chr11_57479534_57520702	0/0	t0004	835	8	7	1	0	0	0	copy fasta	SLC43A1	chr11	57479534	57520702
SLC43A1_chr11_57479534_57520702	0/0	t0005	835	6	3	3	0	0	0	copy fasta	SLC43A1	chr11	57479534	57520702
SLC43A1_chr11_57479534_57520702	0/0	t0006	835	6	6	0	0	0	0	copy fasta	SLC43A1	chr11	57479534	57520702
SLC43A1_chr11_57479534_57520702	0/0	t0007	835	5	4	0	1	0	0	copy fasta	SLC43A1	chr11	57479534	57520702
SLC43A1_chr11_57479534_57520702	0/0	t0008	835	4	0	0	4	0	0	copy fasta	SLC43A1	chr11	57479534	57520702
SLC43A1_chr11_57479534_57520702	0/0	t0009	835	1	1	0	0	0	0	copy fasta	SLC43A1	chr11	57479534	57520702
SLC43A1_chr11_57479534_57520702	0/0	t0010	835	1	0	1	0	0	0	copy fasta	SLC43A1	chr11	57479534	57520702
SLC43A1_chr11_57479534_57520702	0/0	t0011	835	1	0	0	1	0	0	copy fasta	SLC43A1	chr11	57479534	57520702
SLC43A1_chr11_57479534_57520702	0/0	t0012	835	1	1	0	0	0	0	copy fasta	SLC43A1	chr11	57479534	57520702
SLC43A1_chr11_57479534_57520702	0/0	t0013	835	1	0	0	1	0	0	copy fasta	SLC43A1	chr11	57479534	57520702
SLC43A2_chr17_1564268_1633834	0/1	t0001	6424	51	9	3	29	3	6	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	1/0	t0002	6424	34	1	9	23	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0003	6426	28	18	3	0	2	5	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0004	6424	18	0	7	10	0	1	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0005	6427	18	11	1	0	2	4	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0006	6425	11	2	0	9	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0007	6423	11	0	3	6	0	2	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0008	6423	9	0	0	7	2	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0009	6426	6	0	2	3	0	1	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0010	6425	6	0	2	4	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0011	6424	5	0	2	3	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0012	6423	4	0	0	1	2	1	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0013	6428	3	3	0	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0014	6425	3	0	2	1	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0015	6428	3	3	0	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0016	6424	3	1	1	0	1	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0017	6423	3	0	2	0	1	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0018	6424	3	0	0	3	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0019	6426	3	3	0	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0020	6425	3	1	0	0	0	2	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0021	6425	3	0	3	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0022	6425	3	3	0	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0023	6424	3	0	0	3	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0024	6425	3	0	0	2	0	1	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0025	6421	2	0	2	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0026	6423	2	0	0	0	0	2	copy fasta	SLC43A2	chr17	1564268	1633834