JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC43A2_chr17_1564268_1633834	0/0	t0027	6423	2	0	2	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0028	6425	2	0	1	0	0	1	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0029	6424	2	2	0	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0030	6424	2	1	0	0	1	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0031	6424	2	0	0	2	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0032	6426	2	1	0	1	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0033	6424	2	0	1	0	0	1	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0034	6424	2	0	0	0	0	2	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0035	6427	2	2	0	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0036	6424	2	2	0	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0037	6427	2	2	0	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0038	6427	2	1	1	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0039	6426	2	0	2	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0040	6427	2	0	2	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0041	6426	2	2	0	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0042	6423	2	0	0	2	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0043	6425	2	0	0	2	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0044	6424	2	0	1	1	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0045	6425	2	0	0	2	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0046	6424	2	0	1	0	0	1	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0047	6420	1	0	1	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0048	6423	1	0	1	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0049	6426	1	1	0	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0050	6422	1	1	0	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0051	6428	1	1	0	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0052	6428	1	1	0	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0053	6425	1	0	0	0	0	1	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0054	6426	1	0	1	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0055	6425	1	0	0	1	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0056	6423	1	0	1	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0057	6426	1	0	1	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0058	6424	1	0	1	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0059	6424	1	0	0	0	0	1	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0060	6426	1	1	0	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0061	6424	1	1	0	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0062	6424	1	1	0	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0063	6427	1	0	1	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0064	6428	1	1	0	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0065	6425	1	1	0	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0066	6425	1	1	0	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0067	6426	1	1	0	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0068	6424	1	0	0	0	0	1	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0069	6424	1	0	1	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0070	6423	1	1	0	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0071	6427	1	1	0	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0072	6429	1	1	0	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0073	6428	1	1	0	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0074	6426	1	1	0	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0075	6426	1	1	0	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0076	6426	1	1	0	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834