Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BCORL1_chrX_129977635_130063071	0/0	t0005	2108	2	2	0	0	0	0	copy fasta	BCORL1	chrX	129977635	130063071
BCORL1_chrX_129977635_130063071	0/0	t0006	2108	2	2	0	0	0	0	copy fasta	BCORL1	chrX	129977635	130063071
BCORL1_chrX_129977635_130063071	0/0	t0007	2108	2	2	0	0	0	0	copy fasta	BCORL1	chrX	129977635	130063071
BCORL1_chrX_129977635_130063071	0/0	t0008	2108	2	2	0	0	0	0	copy fasta	BCORL1	chrX	129977635	130063071
BCORL1_chrX_129977635_130063071	0/0	t0009	2108	1	1	0	0	0	0	copy fasta	BCORL1	chrX	129977635	130063071
BCORL1_chrX_129977635_130063071	0/0	t0010	2108	1	1	0	0	0	0	copy fasta	BCORL1	chrX	129977635	130063071
BCORL1_chrX_129977635_130063071	0/0	t0011	2073	1	0	0	1	0	0	copy fasta	BCORL1	chrX	129977635	130063071
BCORL1_chrX_129977635_130063071	0/0	t0012	2109	1	0	0	1	0	0	copy fasta	BCORL1	chrX	129977635	130063071
BCORL1_chrX_129977635_130063071	0/0	t0013	2108	1	1	0	0	0	0	copy fasta	BCORL1	chrX	129977635	130063071
BCORL1_chrX_129977635_130063071	0/0	t0014	2108	1	0	1	0	0	0	copy fasta	BCORL1	chrX	129977635	130063071
BCORL1_chrX_129977635_130063071	0/0	t0015	2108	1	1	0	0	0	0	copy fasta	BCORL1	chrX	129977635	130063071
BCORL1_chrX_129977635_130063071	0/0	t0016	2110	1	0	0	1	0	0	copy fasta	BCORL1	chrX	129977635	130063071
BCOR_chrX_40046251_40102958	1/1	t0001	1643	187	26	30	104	6	19	copy fasta	BCOR	chrX	40046251	40102958
BCOR_chrX_40046251_40102958	0/0	t0002	1643	29	27	1	0	0	1	copy fasta	BCOR	chrX	40046251	40102958
BCOR_chrX_40046251_40102958	0/0	t0003	1645	19	10	4	0	1	4	copy fasta	BCOR	chrX	40046251	40102958
BCOR_chrX_40046251_40102958	0/0	t0004	1645	7	6	0	0	0	1	copy fasta	BCOR	chrX	40046251	40102958
BCOR_chrX_40046251_40102958	0/0	t0005	1643	3	0	0	2	0	1	copy fasta	BCOR	chrX	40046251	40102958
BCOR_chrX_40046251_40102958	0/0	t0006	1643	2	0	0	2	0	0	copy fasta	BCOR	chrX	40046251	40102958
BCOR_chrX_40046251_40102958	0/0	t0007	1643	2	0	1	0	1	0	copy fasta	BCOR	chrX	40046251	40102958
BCOR_chrX_40046251_40102958	0/0	t0008	1643	1	0	0	0	1	0	copy fasta	BCOR	chrX	40046251	40102958
BCOR_chrX_40046251_40102958	0/0	t0009	1645	1	1	0	0	0	0	copy fasta	BCOR	chrX	40046251	40102958
BCOR_chrX_40046251_40102958	0/0	t0010	1643	1	1	0	0	0	0	copy fasta	BCOR	chrX	40046251	40102958
BCOR_chrX_40046251_40102958	0/0	t0011	1643	1	0	0	1	0	0	copy fasta	BCOR	chrX	40046251	40102958
BCOR_chrX_40046251_40102958	0/0	t0012	1644	1	1	0	0	0	0	copy fasta	BCOR	chrX	40046251	40102958
BCOR_chrX_40046251_40102958	0/0	t0013	1643	1	0	0	1	0	0	copy fasta	BCOR	chrX	40046251	40102958
BCOR_chrX_40046251_40102958	0/0	t0014	1644	1	0	0	1	0	0	copy fasta	BCOR	chrX	40046251	40102958
BCOR_chrX_40046251_40102958	0/0	t0015	1642	1	0	0	1	0	0	copy fasta	BCOR	chrX	40046251	40102958
BCR_chr22_23175509_23323037	0/1	t0001	2977	9	2	5	0	1	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0002	2977	7	0	0	7	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0003	2977	7	0	1	5	0	1	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0004	2977	5	0	2	3	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0005	2983	5	0	5	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0006	2977	4	1	3	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0007	2980	4	0	1	2	0	1	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0008	2972	3	0	1	0	1	1	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0009	2974	3	1	0	1	0	1	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0010	2977	3	3	0	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0011	2977	3	1	0	2	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0012	2977	3	3	0	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0013	2974	3	1	0	2	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0014	2983	3	0	0	3	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0015	2971	3	0	3	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0016	2976	2	1	1	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0017	2977	2	1	0	0	0	1	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0018	2977	2	2	0	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0019	2977	2	0	1	0	1	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0020	2972	2	0	2	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0021	2974	2	2	0	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0022	2977	2	0	0	0	0	2	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0023	2974	2	0	0	2	0	0	copy fasta	BCR	chr22	23175509	23323037