JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC43A2_chr17_1564268_1633834	0/0	t0127	6426	1	1	0	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0128	6426	1	0	0	1	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0129	6424	1	0	0	1	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0130	6426	1	0	0	1	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0131	6424	1	0	0	1	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0132	6425	1	0	0	1	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0133	6424	1	0	0	1	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0134	6422	1	0	0	1	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0135	6426	1	0	0	1	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0136	6425	1	0	0	1	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0137	6424	1	0	0	1	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0138	6426	1	0	0	1	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0139	6426	1	0	0	1	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0140	6427	1	0	0	1	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0141	6426	1	0	0	1	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0142	6426	1	0	0	1	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0143	6427	1	0	0	1	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0144	6426	1	1	0	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0145	6424	1	0	0	1	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0146	6424	1	0	0	0	0	1	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	t0147	6426	1	0	0	0	0	1	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A3_chr11_57401954_57432121	1/0	t0001	1144	142	33	26	53	3	26	copy fasta	SLC43A3	chr11	57401954	57432121
SLC43A3_chr11_57401954_57432121	0/0	t0002	1144	53	13	11	18	3	8	copy fasta	SLC43A3	chr11	57401954	57432121
SLC43A3_chr11_57401954_57432121	0/1	t0003	1144	52	0	5	38	4	4	copy fasta	SLC43A3	chr11	57401954	57432121
SLC43A3_chr11_57401954_57432121	0/0	t0004	1152	10	0	3	0	4	3	copy fasta	SLC43A3	chr11	57401954	57432121
SLC43A3_chr11_57401954_57432121	0/0	t0005	1140	9	9	0	0	0	0	copy fasta	SLC43A3	chr11	57401954	57432121
SLC43A3_chr11_57401954_57432121	0/0	t0006	1150	9	0	0	8	0	1	copy fasta	SLC43A3	chr11	57401954	57432121
SLC43A3_chr11_57401954_57432121	0/0	t0007	1142	8	8	0	0	0	0	copy fasta	SLC43A3	chr11	57401954	57432121
SLC43A3_chr11_57401954_57432121	0/0	t0008	1146	7	1	4	0	2	0	copy fasta	SLC43A3	chr11	57401954	57432121
SLC43A3_chr11_57401954_57432121	0/0	t0009	1140	5	2	0	3	0	0	copy fasta	SLC43A3	chr11	57401954	57432121
SLC43A3_chr11_57401954_57432121	0/0	t0010	1146	4	0	0	4	0	0	copy fasta	SLC43A3	chr11	57401954	57432121
SLC43A3_chr11_57401954_57432121	0/0	t0011	1146	4	1	1	2	0	0	copy fasta	SLC43A3	chr11	57401954	57432121
SLC43A3_chr11_57401954_57432121	0/0	t0012	1129	4	4	0	0	0	0	copy fasta	SLC43A3	chr11	57401954	57432121
SLC43A3_chr11_57401954_57432121	0/0	t0013	1134	3	3	0	0	0	0	copy fasta	SLC43A3	chr11	57401954	57432121
SLC43A3_chr11_57401954_57432121	0/0	t0014	1144	2	1	1	0	0	0	copy fasta	SLC43A3	chr11	57401954	57432121
SLC43A3_chr11_57401954_57432121	0/0	t0015	1148	2	2	0	0	0	0	copy fasta	SLC43A3	chr11	57401954	57432121
SLC43A3_chr11_57401954_57432121	0/0	t0016	1144	2	0	0	2	0	0	copy fasta	SLC43A3	chr11	57401954	57432121
SLC43A3_chr11_57401954_57432121	0/0	t0017	1154	2	0	2	0	0	0	copy fasta	SLC43A3	chr11	57401954	57432121
SLC43A3_chr11_57401954_57432121	0/0	t0018	1140	2	2	0	0	0	0	copy fasta	SLC43A3	chr11	57401954	57432121
SLC43A3_chr11_57401954_57432121	0/0	t0019	1144	2	0	0	2	0	0	copy fasta	SLC43A3	chr11	57401954	57432121
SLC43A3_chr11_57401954_57432121	0/0	t0020	1140	1	1	0	0	0	0	copy fasta	SLC43A3	chr11	57401954	57432121
SLC43A3_chr11_57401954_57432121	0/0	t0021	1154	1	0	0	1	0	0	copy fasta	SLC43A3	chr11	57401954	57432121
SLC43A3_chr11_57401954_57432121	0/0	t0022	1142	1	1	0	0	0	0	copy fasta	SLC43A3	chr11	57401954	57432121
SLC43A3_chr11_57401954_57432121	0/0	t0023	1144	1	0	0	1	0	0	copy fasta	SLC43A3	chr11	57401954	57432121
SLC43A3_chr11_57401954_57432121	0/0	t0024	1148	1	1	0	0	0	0	copy fasta	SLC43A3	chr11	57401954	57432121
SLC43A3_chr11_57401954_57432121	0/0	t0025	1144	1	1	0	0	0	0	copy fasta	SLC43A3	chr11	57401954	57432121
SLC43A3_chr11_57401954_57432121	0/0	t0026	1140	1	1	0	0	0	0	copy fasta	SLC43A3	chr11	57401954	57432121
SLC43A3_chr11_57401954_57432121	0/0	t0027	1140	1	0	1	0	0	0	copy fasta	SLC43A3	chr11	57401954	57432121
SLC44A1_chr9_105239651_105402346	0/0	t0001	8508	17	8	2	5	2	0	copy fasta	SLC44A1	chr9	105239651	105402346
SLC44A1_chr9_105239651_105402346	0/0	t0002	8504	10	1	1	5	1	2	copy fasta	SLC44A1	chr9	105239651	105402346