JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC44A1_chr9_105239651_105402346	0/0	t0053	8513	1	1	0	0	0	0	copy fasta	SLC44A1	chr9	105239651	105402346
SLC44A1_chr9_105239651_105402346	0/0	t0054	8508	1	0	1	0	0	0	copy fasta	SLC44A1	chr9	105239651	105402346
SLC44A1_chr9_105239651_105402346	0/0	t0055	8495	1	1	0	0	0	0	copy fasta	SLC44A1	chr9	105239651	105402346
SLC44A1_chr9_105239651_105402346	0/0	t0056	8509	1	0	1	0	0	0	copy fasta	SLC44A1	chr9	105239651	105402346
SLC44A1_chr9_105239651_105402346	0/0	t0057	8507	1	0	0	0	1	0	copy fasta	SLC44A1	chr9	105239651	105402346
SLC44A1_chr9_105239651_105402346	0/0	t0058	8515	1	1	0	0	0	0	copy fasta	SLC44A1	chr9	105239651	105402346
SLC44A1_chr9_105239651_105402346	0/0	t0059	8513	1	1	0	0	0	0	copy fasta	SLC44A1	chr9	105239651	105402346
SLC44A1_chr9_105239651_105402346	0/0	t0060	8513	1	0	0	1	0	0	copy fasta	SLC44A1	chr9	105239651	105402346
SLC44A1_chr9_105239651_105402346	0/0	t0061	8503	1	1	0	0	0	0	copy fasta	SLC44A1	chr9	105239651	105402346
SLC44A1_chr9_105239651_105402346	0/0	t0062	8511	1	1	0	0	0	0	copy fasta	SLC44A1	chr9	105239651	105402346
SLC44A1_chr9_105239651_105402346	0/0	t0063	8499	1	0	0	1	0	0	copy fasta	SLC44A1	chr9	105239651	105402346
SLC44A1_chr9_105239651_105402346	0/0	t0064	8505	1	1	0	0	0	0	copy fasta	SLC44A1	chr9	105239651	105402346
SLC44A1_chr9_105239651_105402346	0/0	t0065	8502	1	0	1	0	0	0	copy fasta	SLC44A1	chr9	105239651	105402346
SLC44A1_chr9_105239651_105402346	0/0	t0066	8508	1	1	0	0	0	0	copy fasta	SLC44A1	chr9	105239651	105402346
SLC44A1_chr9_105239651_105402346	0/0	t0067	8507	1	1	0	0	0	0	copy fasta	SLC44A1	chr9	105239651	105402346
SLC44A1_chr9_105239651_105402346	0/0	t0068	8507	1	1	0	0	0	0	copy fasta	SLC44A1	chr9	105239651	105402346
SLC44A1_chr9_105239651_105402346	0/0	t0069	8506	1	1	0	0	0	0	copy fasta	SLC44A1	chr9	105239651	105402346
SLC44A1_chr9_105239651_105402346	0/0	t0070	8501	1	1	0	0	0	0	copy fasta	SLC44A1	chr9	105239651	105402346
SLC44A1_chr9_105239651_105402346	0/0	t0071	8510	1	1	0	0	0	0	copy fasta	SLC44A1	chr9	105239651	105402346
SLC44A1_chr9_105239651_105402346	0/0	t0072	8507	1	0	1	0	0	0	copy fasta	SLC44A1	chr9	105239651	105402346
SLC44A1_chr9_105239651_105402346	0/0	t0073	8501	1	1	0	0	0	0	copy fasta	SLC44A1	chr9	105239651	105402346
SLC44A1_chr9_105239651_105402346	0/0	t0074	8501	1	0	1	0	0	0	copy fasta	SLC44A1	chr9	105239651	105402346
SLC44A1_chr9_105239651_105402346	0/0	t0075	8501	1	1	0	0	0	0	copy fasta	SLC44A1	chr9	105239651	105402346
SLC44A1_chr9_105239651_105402346	0/0	t0076	8509	1	1	0	0	0	0	copy fasta	SLC44A1	chr9	105239651	105402346
SLC44A1_chr9_105239651_105402346	0/0	t0077	8504	1	1	0	0	0	0	copy fasta	SLC44A1	chr9	105239651	105402346
SLC44A1_chr9_105239651_105402346	0/0	t0078	8508	1	1	0	0	0	0	copy fasta	SLC44A1	chr9	105239651	105402346
SLC44A1_chr9_105239651_105402346	0/0	t0079	8512	1	1	0	0	0	0	copy fasta	SLC44A1	chr9	105239651	105402346
SLC44A1_chr9_105239651_105402346	0/0	t0080	8518	1	1	0	0	0	0	copy fasta	SLC44A1	chr9	105239651	105402346
SLC44A1_chr9_105239651_105402346	0/0	t0081	8507	1	1	0	0	0	0	copy fasta	SLC44A1	chr9	105239651	105402346
SLC44A1_chr9_105239651_105402346	0/0	t0082	8506	1	0	1	0	0	0	copy fasta	SLC44A1	chr9	105239651	105402346
SLC44A1_chr9_105239651_105402346	0/0	t0083	8509	1	0	0	0	0	1	copy fasta	SLC44A1	chr9	105239651	105402346
SLC44A1_chr9_105239651_105402346	0/0	t0084	8499	1	0	1	0	0	0	copy fasta	SLC44A1	chr9	105239651	105402346
SLC44A1_chr9_105239651_105402346	0/0	t0085	8502	1	1	0	0	0	0	copy fasta	SLC44A1	chr9	105239651	105402346
SLC44A2_chr19_10620553_10649557	0/1	t0001	1254	157	34	44	52	6	20	copy fasta	SLC44A2	chr19	10620553	10649557
SLC44A2_chr19_10620553_10649557	0/0	t0002	1254	79	1	19	44	8	7	copy fasta	SLC44A2	chr19	10620553	10649557
SLC44A2_chr19_10620553_10649557	0/0	t0003	1254	49	4	5	40	0	0	copy fasta	SLC44A2	chr19	10620553	10649557
SLC44A2_chr19_10620553_10649557	0/0	t0004	1254	28	13	4	4	1	6	copy fasta	SLC44A2	chr19	10620553	10649557
SLC44A2_chr19_10620553_10649557	0/0	t0005	1254	28	0	0	28	0	0	copy fasta	SLC44A2	chr19	10620553	10649557
SLC44A2_chr19_10620553_10649557	0/0	t0006	1254	27	0	0	23	0	4	copy fasta	SLC44A2	chr19	10620553	10649557
SLC44A2_chr19_10620553_10649557	0/0	t0007	1254	8	0	1	2	3	2	copy fasta	SLC44A2	chr19	10620553	10649557
SLC44A2_chr19_10620553_10649557	0/0	t0008	1254	6	6	0	0	0	0	copy fasta	SLC44A2	chr19	10620553	10649557
SLC44A2_chr19_10620553_10649557	0/0	t0009	1254	5	4	0	1	0	0	copy fasta	SLC44A2	chr19	10620553	10649557
SLC44A2_chr19_10620553_10649557	0/0	t0010	1254	5	3	0	2	0	0	copy fasta	SLC44A2	chr19	10620553	10649557
SLC44A2_chr19_10620553_10649557	0/0	t0011	1254	1	0	1	0	0	0	copy fasta	SLC44A2	chr19	10620553	10649557
SLC44A2_chr19_10620553_10649557	1/0	t0012	1254	1	0	0	0	0	0	copy fasta	SLC44A2	chr19	10620553	10649557
SLC44A2_chr19_10620553_10649557	0/0	t0013	1254	1	0	0	1	0	0	copy fasta	SLC44A2	chr19	10620553	10649557
SLC44A2_chr19_10620553_10649557	0/0	t0014	1254	1	0	0	1	0	0	copy fasta	SLC44A2	chr19	10620553	10649557
SLC44A2_chr19_10620553_10649557	0/0	t0015	1254	1	1	0	0	0	0	copy fasta	SLC44A2	chr19	10620553	10649557
SLC44A2_chr19_10620553_10649557	0/0	t0016	1254	1	0	0	0	0	1	copy fasta	SLC44A2	chr19	10620553	10649557
SLC44A2_chr19_10620553_10649557	0/0	t0017	1254	1	0	0	1	0	0	copy fasta	SLC44A2	chr19	10620553	10649557