JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC44A2_chr19_10620553_10649557	0/0	t0018	1254	1	0	0	1	0	0	copy fasta	SLC44A2	chr19	10620553	10649557
SLC44A2_chr19_10620553_10649557	0/0	t0019	1254	1	0	0	1	0	0	copy fasta	SLC44A2	chr19	10620553	10649557
SLC44A2_chr19_10620553_10649557	0/0	t0020	1254	1	0	0	1	0	0	copy fasta	SLC44A2	chr19	10620553	10649557
SLC44A3_chr1_94815357_94900246	1/1	t0001	420	325	78	71	122	14	38	copy fasta	SLC44A3	chr1	94815357	94900246
SLC44A3_chr1_94815357_94900246	0/0	t0002	419	28	11	2	15	0	0	copy fasta	SLC44A3	chr1	94815357	94900246
SLC44A3_chr1_94815357_94900246	0/0	t0003	420	2	0	0	2	0	0	copy fasta	SLC44A3	chr1	94815357	94900246
SLC44A3_chr1_94815357_94900246	0/0	t0004	420	1	0	0	1	0	0	copy fasta	SLC44A3	chr1	94815357	94900246
SLC44A3_chr1_94815357_94900246	0/0	t0005	420	1	0	0	1	0	0	copy fasta	SLC44A3	chr1	94815357	94900246
SLC44A3_chr1_94815357_94900246	0/0	t0006	420	1	0	1	0	0	0	copy fasta	SLC44A3	chr1	94815357	94900246
SLC44A3_chr1_94815357_94900246	0/0	t0007	420	1	1	0	0	0	0	copy fasta	SLC44A3	chr1	94815357	94900246
SLC44A3_chr1_94815357_94900246	0/0	t0008	420	1	0	0	1	0	0	copy fasta	SLC44A3	chr1	94815357	94900246
SLC44A4_chr6_31858192_31883997	0/1	t0001	453	393	80	84	172	17	39	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/0	t0002	453	35	14	1	15	1	4	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/0	t0003	453	1	0	0	1	0	0	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/0	t0004	453	1	0	0	0	0	1	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/0	t0005	453	1	1	0	0	0	0	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/0	t0006	453	1	0	1	0	0	0	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/0	t0007	453	1	1	0	0	0	0	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A5_chr1_75197129_75616114	1/1	t0001	1743	102	36	27	15	3	19	copy fasta	SLC44A5	chr1	75197129	75616114
SLC44A5_chr1_75197129_75616114	0/0	t0002	1744	27	12	11	1	0	3	copy fasta	SLC44A5	chr1	75197129	75616114
SLC44A5_chr1_75197129_75616114	0/0	t0003	1743	9	9	0	0	0	0	copy fasta	SLC44A5	chr1	75197129	75616114
SLC44A5_chr1_75197129_75616114	0/0	t0004	1744	4	4	0	0	0	0	copy fasta	SLC44A5	chr1	75197129	75616114
SLC44A5_chr1_75197129_75616114	0/0	t0005	1742	3	3	0	0	0	0	copy fasta	SLC44A5	chr1	75197129	75616114
SLC44A5_chr1_75197129_75616114	0/0	t0006	1743	3	3	0	0	0	0	copy fasta	SLC44A5	chr1	75197129	75616114
SLC44A5_chr1_75197129_75616114	0/0	t0007	1742	2	2	0	0	0	0	copy fasta	SLC44A5	chr1	75197129	75616114
SLC44A5_chr1_75197129_75616114	0/0	t0008	1743	2	0	1	0	0	1	copy fasta	SLC44A5	chr1	75197129	75616114
SLC44A5_chr1_75197129_75616114	0/0	t0009	1743	1	0	1	0	0	0	copy fasta	SLC44A5	chr1	75197129	75616114
SLC44A5_chr1_75197129_75616114	0/0	t0010	1743	1	0	0	0	1	0	copy fasta	SLC44A5	chr1	75197129	75616114
SLC44A5_chr1_75197129_75616114	0/0	t0011	1743	1	0	0	0	0	1	copy fasta	SLC44A5	chr1	75197129	75616114
SLC44A5_chr1_75197129_75616114	0/0	t0012	1743	1	1	0	0	0	0	copy fasta	SLC44A5	chr1	75197129	75616114
SLC45A1_chr1_8313114_8349165	0/0	t0001	250	300	67	56	127	13	37	copy fasta	SLC45A1	chr1	8313114	8349165
SLC45A1_chr1_8313114_8349165	0/1	t0002	250	63	7	13	29	2	11	copy fasta	SLC45A1	chr1	8313114	8349165
SLC45A1_chr1_8313114_8349165	0/0	t0003	250	20	19	1	0	0	0	copy fasta	SLC45A1	chr1	8313114	8349165
SLC45A1_chr1_8313114_8349165	0/0	t0004	250	2	2	0	0	0	0	copy fasta	SLC45A1	chr1	8313114	8349165
SLC45A1_chr1_8313114_8349165	1/0	t0005	250	2	1	0	0	0	0	copy fasta	SLC45A1	chr1	8313114	8349165
SLC45A1_chr1_8313114_8349165	0/0	t0006	250	1	0	0	0	1	0	copy fasta	SLC45A1	chr1	8313114	8349165
SLC45A2_chr5_33939623_33989693	1/1	t0001	136	438	98	70	213	12	43	copy fasta	SLC45A2	chr5	33939623	33989693
SLC45A2_chr5_33939623_33989693	0/0	t0002	136	1	0	0	1	0	0	copy fasta	SLC45A2	chr5	33939623	33989693
SLC45A2_chr5_33939623_33989693	0/0	t0003	136	1	0	0	0	0	1	copy fasta	SLC45A2	chr5	33939623	33989693
SLC45A3_chr1_205652851_205685509	1/1	t0001	1730	242	63	43	92	12	30	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	t0002	1729	40	9	2	23	1	5	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	t0003	1729	36	0	4	30	0	2	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	t0004	1730	16	0	3	12	0	1	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	t0005	1730	12	2	8	0	1	1	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	t0006	1729	6	0	1	2	0	3	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	t0007	1730	5	5	0	0	0	0	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	t0008	1730	5	0	3	1	0	1	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	t0009	1730	5	4	1	0	0	0	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	t0010	1730	4	0	0	4	0	0	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	t0011	1729	3	3	0	0	0	0	copy fasta	SLC45A3	chr1	205652851	205685509