JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC45A3_chr1_205652851_205685509	0/0	t0012	1730	3	2	1	0	0	0	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	t0013	1747	3	3	0	0	0	0	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	t0014	1730	3	0	3	0	0	0	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	t0015	1730	2	2	0	0	0	0	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	t0016	1729	2	0	0	0	0	2	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	t0017	1729	2	2	0	0	0	0	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	t0018	1730	1	0	0	1	0	0	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	t0019	1729	1	0	0	1	0	0	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	t0020	1730	1	0	0	1	0	0	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	t0021	1730	1	0	0	1	0	0	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	t0022	1730	1	1	0	0	0	0	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	t0023	1730	1	1	0	0	0	0	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	t0024	1730	1	0	1	0	0	0	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	t0025	1730	1	0	0	1	0	0	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	t0026	1730	1	1	0	0	0	0	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	t0027	1729	1	1	0	0	0	0	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	t0028	1730	1	0	0	0	0	1	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	t0029	1730	1	0	0	1	0	0	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	t0030	1729	1	0	0	1	0	0	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	t0031	1730	1	0	0	1	0	0	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	t0032	1730	1	1	0	0	0	0	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A4_chr8_141202174_141313288	0/0	t0001	4991	62	11	11	23	6	11	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	1/0	t0002	4992	31	7	10	5	2	6	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	t0003	4991	15	0	1	12	1	1	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	t0004	4992	7	7	0	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	t0005	4991	6	6	0	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/1	t0006	4991	6	0	0	4	0	1	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	t0007	4991	5	5	0	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	t0008	4992	3	3	0	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	t0009	4992	3	3	0	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	t0010	4991	3	3	0	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	t0011	4991	3	2	1	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	t0012	4991	3	2	1	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	t0013	4991	3	0	1	0	2	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	t0014	4992	2	2	0	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	t0015	4992	2	2	0	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	t0016	4991	2	0	2	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	t0017	4992	2	0	1	1	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	t0018	4991	2	0	0	2	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	t0019	4992	1	1	0	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	t0020	4991	1	0	0	1	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	t0021	4992	1	0	0	0	1	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	t0022	4992	1	0	0	0	0	1	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	t0023	4992	1	0	1	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	t0024	4992	1	0	1	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	t0025	4992	1	0	0	1	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	t0026	4992	1	1	0	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	t0027	4991	1	1	0	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	t0028	4991	1	1	0	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	t0029	4991	1	1	0	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288