JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC45A4_chr8_141202174_141313288	0/0	t0030	4991	1	0	1	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	t0031	4991	1	1	0	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	t0032	4991	1	1	0	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	t0033	4991	1	1	0	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	t0034	4992	1	1	0	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	t0035	4991	1	1	0	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	t0036	4991	1	1	0	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	t0037	4992	1	1	0	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	t0038	4991	1	1	0	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	t0039	4991	1	0	0	0	0	1	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	t0040	4992	1	0	0	1	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	t0041	4992	1	0	0	1	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	t0042	4991	1	0	0	0	0	1	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	t0043	4991	1	0	0	0	0	1	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	t0044	4991	1	0	0	0	0	1	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	t0045	4991	1	0	0	1	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	t0046	4991	1	0	1	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC46A1_chr17_28389642_28411212	0/0	t0001	5114	175	34	38	80	8	15	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	1/0	t0002	5113	61	8	6	39	2	5	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/0	t0003	5113	29	4	11	2	4	8	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/1	t0004	5113	18	2	5	1	1	8	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/0	t0005	5114	16	16	0	0	0	0	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/0	t0006	5114	13	12	1	0	0	0	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/0	t0007	5113	9	0	0	9	0	0	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/0	t0008	5114	8	0	0	8	0	0	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/0	t0009	5113	7	1	6	0	0	0	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/0	t0010	5114	6	0	2	4	0	0	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/0	t0011	5113	5	0	0	5	0	0	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/0	t0012	5113	4	3	1	0	0	0	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/0	t0013	5112	3	2	1	0	0	0	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/0	t0014	5113	3	3	0	0	0	0	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/0	t0015	5114	3	3	0	0	0	0	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/0	t0016	5114	2	0	0	2	0	0	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/0	t0017	5113	2	0	0	2	0	0	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/0	t0018	5114	2	2	0	0	0	0	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/0	t0019	5114	2	0	0	2	0	0	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/0	t0020	5114	2	0	2	0	0	0	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/0	t0021	5114	2	0	0	2	0	0	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/0	t0022	5114	2	0	0	2	0	0	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/0	t0023	5113	1	1	0	0	0	0	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/0	t0024	5113	1	0	1	0	0	0	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/0	t0025	5113	1	0	0	0	1	0	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/0	t0026	5114	1	1	0	0	0	0	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/0	t0027	5113	1	0	0	0	0	1	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/0	t0028	5114	1	1	0	0	0	0	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/0	t0029	5114	1	0	0	0	0	1	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/0	t0030	5114	1	0	0	1	0	0	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/0	t0031	5113	1	0	0	0	0	1	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/0	t0032	5114	1	0	0	1	0	0	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/0	t0033	5114	1	0	1	0	0	0	copy fasta	SLC46A1	chr17	28389642	28411212