JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC46A1_chr17_28389642_28411212	0/0	t0034	5114	1	0	1	0	0	0	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/0	t0035	5114	1	0	0	0	0	1	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/0	t0036	5114	1	0	1	0	0	0	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/0	t0037	5114	1	0	1	0	0	0	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/0	t0038	5114	1	0	0	1	0	0	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/0	t0039	5114	1	1	0	0	0	0	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/0	t0040	5114	1	1	0	0	0	0	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/0	t0041	5114	1	1	0	0	0	0	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/0	t0042	5114	1	0	0	1	0	0	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A2_chr9_112873920_112895876	1/0	t0001	1038	250	57	33	121	9	29	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	t0002	1038	68	7	14	36	4	7	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	t0003	1012	57	10	17	25	1	4	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/1	t0004	1038	18	0	5	9	2	1	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	t0005	1038	10	0	5	5	0	0	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	t0006	1064	7	0	2	5	0	0	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	t0007	1012	6	0	3	0	2	1	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	t0008	1064	5	5	0	0	0	0	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	t0009	1012	5	5	0	0	0	0	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	t0010	1038	4	4	0	0	0	0	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	t0011	1012	3	3	0	0	0	0	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	t0012	1064	2	0	0	2	0	0	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	t0013	1012	2	2	0	0	0	0	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	t0014	1038	2	2	0	0	0	0	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	t0015	1013	1	1	0	0	0	0	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	t0016	1090	1	0	0	1	0	0	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	t0017	1064	1	1	0	0	0	0	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	t0018	1012	1	1	0	0	0	0	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	t0019	1012	1	1	0	0	0	0	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	t0020	1012	1	1	0	0	0	0	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	t0021	1012	1	0	1	0	0	0	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A3_chr13_28695080_28723970	0/1	t0001	1917	120	9	28	61	7	14	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	t0002	1918	87	10	7	54	0	16	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	t0003	1917	87	9	14	52	3	9	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	t0004	1917	71	25	18	17	5	6	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	t0005	1917	9	9	0	0	0	0	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	t0006	1917	8	8	0	0	0	0	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	t0007	1917	7	6	0	0	1	0	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	t0008	1917	6	5	1	0	0	0	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	t0009	1917	5	0	0	5	0	0	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	t0010	1917	4	4	0	0	0	0	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	t0011	1918	2	1	1	0	0	0	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	t0012	1917	2	2	0	0	0	0	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	t0013	1917	1	0	0	1	0	0	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	t0014	1917	1	0	0	0	0	1	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	t0015	1917	1	0	1	0	0	0	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	t0016	1918	1	0	0	1	0	0	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	t0017	1917	1	1	0	0	0	0	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	t0018	1917	1	0	0	1	0	0	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	t0019	1917	1	0	0	1	0	0	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	1/0	t0020	1917	1	0	0	0	0	0	copy fasta	SLC46A3	chr13	28695080	28723970