JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC46A3_chr13_28695080_28723970	0/0	t0021	1917	1	1	0	0	0	0	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	t0022	1917	1	1	0	0	0	0	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	t0023	1917	1	0	1	0	0	0	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	t0024	1917	1	0	1	0	0	0	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	t0025	1918	1	0	0	1	0	0	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	t0026	1917	1	1	0	0	0	0	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	t0027	1917	1	0	0	1	0	0	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	t0028	1917	1	1	0	0	0	0	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	t0029	1917	1	1	0	0	0	0	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	t0030	1918	1	0	0	1	0	0	copy fasta	SLC46A3	chr13	28695080	28723970
SLC47A1_chr17_19528854_19584034	1/1	t0001	1568	155	34	27	65	9	18	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	t0002	1568	54	1	9	38	1	5	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	t0003	1568	43	14	13	12	0	4	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	t0004	1568	15	1	4	9	0	1	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	t0005	1568	9	1	4	0	3	1	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	t0006	1568	8	2	0	5	0	1	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	t0007	1568	8	8	0	0	0	0	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	t0008	1568	7	2	0	5	0	0	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	t0009	1568	7	3	0	0	0	4	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	t0010	1546	4	4	0	0	0	0	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	t0011	1568	3	2	1	0	0	0	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	t0012	1568	3	2	1	0	0	0	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	t0013	1568	2	1	0	1	0	0	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	t0014	1568	2	0	2	0	0	0	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	t0015	1568	2	2	0	0	0	0	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	t0016	1568	1	1	0	0	0	0	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	t0017	1568	1	0	1	0	0	0	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	t0018	1568	1	0	0	0	0	1	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	t0019	1568	1	1	0	0	0	0	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	t0020	1568	1	1	0	0	0	0	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	t0021	1568	1	0	0	1	0	0	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	t0022	1568	1	0	1	0	0	0	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	t0023	1568	1	1	0	0	0	0	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	t0024	1568	1	0	0	0	1	0	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	t0025	1568	1	0	0	0	0	1	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	t0026	1568	1	1	0	0	0	0	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	t0027	1568	1	1	0	0	0	0	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	t0028	1568	1	1	0	0	0	0	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	t0029	1590	1	1	0	0	0	0	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	t0030	1590	1	1	0	0	0	0	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	t0031	1590	1	0	1	0	0	0	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A2_chr17_19673317_19721584	1/1	t0001	399	361	81	77	152	16	33	copy fasta	SLC47A2	chr17	19673317	19721584
SLC47A2_chr17_19673317_19721584	0/0	t0002	399	2	0	0	2	0	0	copy fasta	SLC47A2	chr17	19673317	19721584
SLC47A2_chr17_19673317_19721584	0/0	t0003	399	2	1	1	0	0	0	copy fasta	SLC47A2	chr17	19673317	19721584
SLC47A2_chr17_19673317_19721584	0/0	t0004	399	1	0	0	0	0	1	copy fasta	SLC47A2	chr17	19673317	19721584
SLC48A1_chr12_47768238_47787751	0/0	t0001	2538	179	52	41	69	3	14	copy fasta	SLC48A1	chr12	47768238	47787751
SLC48A1_chr12_47768238_47787751	0/0	t0002	2539	78	2	1	62	5	8	copy fasta	SLC48A1	chr12	47768238	47787751
SLC48A1_chr12_47768238_47787751	1/1	t0003	2538	46	8	10	15	1	10	copy fasta	SLC48A1	chr12	47768238	47787751
SLC48A1_chr12_47768238_47787751	0/0	t0004	2538	30	3	5	16	2	4	copy fasta	SLC48A1	chr12	47768238	47787751
SLC48A1_chr12_47768238_47787751	0/0	t0005	2539	29	5	0	23	0	1	copy fasta	SLC48A1	chr12	47768238	47787751