JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC48A1_chr12_47768238_47787751	0/0	t0006	2538	15	1	7	0	4	3	copy fasta	SLC48A1	chr12	47768238	47787751
SLC48A1_chr12_47768238_47787751	0/0	t0007	2538	6	5	0	0	1	0	copy fasta	SLC48A1	chr12	47768238	47787751
SLC48A1_chr12_47768238_47787751	0/0	t0008	2538	5	5	0	0	0	0	copy fasta	SLC48A1	chr12	47768238	47787751
SLC48A1_chr12_47768238_47787751	0/0	t0009	2538	4	2	1	1	0	0	copy fasta	SLC48A1	chr12	47768238	47787751
SLC48A1_chr12_47768238_47787751	0/0	t0010	2538	3	3	0	0	0	0	copy fasta	SLC48A1	chr12	47768238	47787751
SLC48A1_chr12_47768238_47787751	0/0	t0011	2554	3	0	0	0	0	3	copy fasta	SLC48A1	chr12	47768238	47787751
SLC48A1_chr12_47768238_47787751	0/0	t0012	2538	3	3	0	0	0	0	copy fasta	SLC48A1	chr12	47768238	47787751
SLC48A1_chr12_47768238_47787751	0/0	t0013	2539	3	0	1	0	0	2	copy fasta	SLC48A1	chr12	47768238	47787751
SLC48A1_chr12_47768238_47787751	0/0	t0014	2539	3	1	2	0	0	0	copy fasta	SLC48A1	chr12	47768238	47787751
SLC48A1_chr12_47768238_47787751	0/0	t0015	2538	2	0	0	0	0	2	copy fasta	SLC48A1	chr12	47768238	47787751
SLC48A1_chr12_47768238_47787751	0/0	t0016	2538	2	2	0	0	0	0	copy fasta	SLC48A1	chr12	47768238	47787751
SLC48A1_chr12_47768238_47787751	0/0	t0017	2538	2	2	0	0	0	0	copy fasta	SLC48A1	chr12	47768238	47787751
SLC48A1_chr12_47768238_47787751	0/0	t0018	2538	1	0	1	0	0	0	copy fasta	SLC48A1	chr12	47768238	47787751
SLC48A1_chr12_47768238_47787751	0/0	t0019	2538	1	0	0	1	0	0	copy fasta	SLC48A1	chr12	47768238	47787751
SLC48A1_chr12_47768238_47787751	0/0	t0020	2538	1	0	0	1	0	0	copy fasta	SLC48A1	chr12	47768238	47787751
SLC48A1_chr12_47768238_47787751	0/0	t0021	2538	1	0	1	0	0	0	copy fasta	SLC48A1	chr12	47768238	47787751
SLC48A1_chr12_47768238_47787751	0/0	t0022	2538	1	0	0	0	1	0	copy fasta	SLC48A1	chr12	47768238	47787751
SLC48A1_chr12_47768238_47787751	0/0	t0023	2538	1	0	0	1	0	0	copy fasta	SLC48A1	chr12	47768238	47787751
SLC48A1_chr12_47768238_47787751	0/0	t0024	2538	1	1	0	0	0	0	copy fasta	SLC48A1	chr12	47768238	47787751
SLC48A1_chr12_47768238_47787751	0/0	t0025	2538	1	0	0	1	0	0	copy fasta	SLC48A1	chr12	47768238	47787751
SLC48A1_chr12_47768238_47787751	0/0	t0026	2538	1	0	0	1	0	0	copy fasta	SLC48A1	chr12	47768238	47787751
SLC48A1_chr12_47768238_47787751	0/0	t0027	2538	1	1	0	0	0	0	copy fasta	SLC48A1	chr12	47768238	47787751
SLC48A1_chr12_47768238_47787751	0/0	t0028	2538	1	0	0	1	0	0	copy fasta	SLC48A1	chr12	47768238	47787751
SLC48A1_chr12_47768238_47787751	0/0	t0029	2538	1	0	0	0	1	0	copy fasta	SLC48A1	chr12	47768238	47787751
SLC48A1_chr12_47768238_47787751	0/0	t0030	2538	1	0	0	1	0	0	copy fasta	SLC48A1	chr12	47768238	47787751
SLC48A1_chr12_47768238_47787751	0/0	t0031	2538	1	0	1	0	0	0	copy fasta	SLC48A1	chr12	47768238	47787751
SLC48A1_chr12_47768238_47787751	0/0	t0032	2538	1	0	0	0	0	1	copy fasta	SLC48A1	chr12	47768238	47787751
SLC48A1_chr12_47768238_47787751	0/0	t0033	2538	1	1	0	0	0	0	copy fasta	SLC48A1	chr12	47768238	47787751
SLC48A1_chr12_47768238_47787751	0/0	t0034	2539	1	0	0	1	0	0	copy fasta	SLC48A1	chr12	47768238	47787751
SLC48A1_chr12_47768238_47787751	0/0	t0035	2539	1	0	0	1	0	0	copy fasta	SLC48A1	chr12	47768238	47787751
SLC48A1_chr12_47768238_47787751	0/0	t0036	2539	1	0	0	1	0	0	copy fasta	SLC48A1	chr12	47768238	47787751
SLC48A1_chr12_47768238_47787751	0/0	t0037	2539	1	1	0	0	0	0	copy fasta	SLC48A1	chr12	47768238	47787751
SLC48A1_chr12_47768238_47787751	0/0	t0038	2539	1	0	0	1	0	0	copy fasta	SLC48A1	chr12	47768238	47787751
SLC48A1_chr12_47768238_47787751	0/0	t0039	2539	1	0	0	1	0	0	copy fasta	SLC48A1	chr12	47768238	47787751
SLC48A1_chr12_47768238_47787751	0/0	t0040	2527	1	0	1	0	0	0	copy fasta	SLC48A1	chr12	47768238	47787751
SLC49A3_chr4_676829_694151	1/1	t0001	154	359	88	81	133	16	39	copy fasta	SLC49A3	chr4	676829	694151
SLC49A3_chr4_676829_694151	0/0	t0002	154	47	0	0	43	0	4	copy fasta	SLC49A3	chr4	676829	694151
SLC49A3_chr4_676829_694151	0/0	t0003	154	4	3	1	0	0	0	copy fasta	SLC49A3	chr4	676829	694151
SLC49A3_chr4_676829_694151	0/0	t0004	154	1	1	0	0	0	0	copy fasta	SLC49A3	chr4	676829	694151
SLC49A3_chr4_676829_694151	0/0	t0005	154	1	0	0	0	0	1	copy fasta	SLC49A3	chr4	676829	694151
SLC49A4_chr3_122790069_122886139	0/0	t0001	1886	159	31	27	88	1	12	copy fasta	SLC49A4	chr3	122790069	122886139
SLC49A4_chr3_122790069_122886139	0/1	t0002	1886	125	26	26	42	8	22	copy fasta	SLC49A4	chr3	122790069	122886139
SLC49A4_chr3_122790069_122886139	0/0	t0003	1886	16	3	1	1	2	9	copy fasta	SLC49A4	chr3	122790069	122886139
SLC49A4_chr3_122790069_122886139	1/0	t0004	1886	11	1	4	3	1	1	copy fasta	SLC49A4	chr3	122790069	122886139
SLC49A4_chr3_122790069_122886139	0/0	t0005	1886	6	6	0	0	0	0	copy fasta	SLC49A4	chr3	122790069	122886139
SLC49A4_chr3_122790069_122886139	0/0	t0006	1886	6	0	2	4	0	0	copy fasta	SLC49A4	chr3	122790069	122886139
SLC49A4_chr3_122790069_122886139	0/0	t0007	1886	3	3	0	0	0	0	copy fasta	SLC49A4	chr3	122790069	122886139
SLC49A4_chr3_122790069_122886139	0/0	t0008	1886	2	2	0	0	0	0	copy fasta	SLC49A4	chr3	122790069	122886139
SLC49A4_chr3_122790069_122886139	0/0	t0009	1886	2	2	0	0	0	0	copy fasta	SLC49A4	chr3	122790069	122886139
SLC49A4_chr3_122790069_122886139	0/0	t0010	1886	2	0	0	0	0	2	copy fasta	SLC49A4	chr3	122790069	122886139