JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC49A4_chr3_122790069_122886139	0/0	t0011	1886	2	2	0	0	0	0	copy fasta	SLC49A4	chr3	122790069	122886139
SLC49A4_chr3_122790069_122886139	0/0	t0012	1886	1	1	0	0	0	0	copy fasta	SLC49A4	chr3	122790069	122886139
SLC49A4_chr3_122790069_122886139	0/0	t0013	1886	1	0	1	0	0	0	copy fasta	SLC49A4	chr3	122790069	122886139
SLC49A4_chr3_122790069_122886139	0/0	t0014	1886	1	1	0	0	0	0	copy fasta	SLC49A4	chr3	122790069	122886139
SLC49A4_chr3_122790069_122886139	0/0	t0015	1886	1	0	1	0	0	0	copy fasta	SLC49A4	chr3	122790069	122886139
SLC49A4_chr3_122790069_122886139	0/0	t0016	1886	1	0	0	1	0	0	copy fasta	SLC49A4	chr3	122790069	122886139
SLC49A4_chr3_122790069_122886139	0/0	t0017	1886	1	1	0	0	0	0	copy fasta	SLC49A4	chr3	122790069	122886139
SLC49A4_chr3_122790069_122886139	0/0	t0018	1886	1	0	0	1	0	0	copy fasta	SLC49A4	chr3	122790069	122886139
SLC49A4_chr3_122790069_122886139	0/0	t0019	1886	1	1	0	0	0	0	copy fasta	SLC49A4	chr3	122790069	122886139
SLC4A10_chr2_161619416_161990270	1/1	t0001	2222	98	49	17	15	6	9	copy fasta	SLC4A10	chr2	161619416	161990270
SLC4A10_chr2_161619416_161990270	0/0	t0002	2222	14	3	0	9	0	2	copy fasta	SLC4A10	chr2	161619416	161990270
SLC4A10_chr2_161619416_161990270	0/0	t0003	2222	1	1	0	0	0	0	copy fasta	SLC4A10	chr2	161619416	161990270
SLC4A10_chr2_161619416_161990270	0/0	t0004	2222	1	0	1	0	0	0	copy fasta	SLC4A10	chr2	161619416	161990270
SLC4A10_chr2_161619416_161990270	0/0	t0005	2222	1	1	0	0	0	0	copy fasta	SLC4A10	chr2	161619416	161990270
SLC4A10_chr2_161619416_161990270	0/0	t0006	2222	1	0	0	0	0	1	copy fasta	SLC4A10	chr2	161619416	161990270
SLC4A10_chr2_161619416_161990270	0/0	t0007	2222	1	1	0	0	0	0	copy fasta	SLC4A10	chr2	161619416	161990270
SLC4A10_chr2_161619416_161990270	0/0	t0008	2222	1	1	0	0	0	0	copy fasta	SLC4A10	chr2	161619416	161990270
SLC4A11_chr20_3222422_3244190	1/1	t0001	419	414	67	81	202	18	44	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	t0002	419	27	23	2	0	0	2	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	t0003	419	4	3	1	0	0	0	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	t0004	419	1	1	0	0	0	0	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A1AP_chr2_27658889_27699969	1/1	t0001	313	323	70	53	154	14	30	copy fasta	SLC4A1AP	chr2	27658889	27699969
SLC4A1AP_chr2_27658889_27699969	0/0	t0002	313	11	8	3	0	0	0	copy fasta	SLC4A1AP	chr2	27658889	27699969
SLC4A1_chr17_44243390_44273135	0/0	t0001	2222	81	17	13	45	3	3	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	t0002	2219	72	2	22	25	6	17	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	t0003	2223	54	16	6	31	0	1	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	t0004	2220	38	7	7	16	0	8	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	t0005	2218	22	1	3	15	2	1	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	t0006	2218	14	0	3	10	0	1	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	t0007	2222	13	0	2	8	1	2	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	t0008	2219	11	0	4	7	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	t0009	2219	10	10	0	0	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	t0010	2223	8	0	1	7	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	t0011	2219	8	0	1	7	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	t0012	2221	7	4	2	0	1	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	t0013	2224	5	3	0	2	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	t0014	2224	4	0	0	4	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	t0015	2220	4	4	0	0	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	t0016	2219	4	2	2	0	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	t0017	2222	4	4	0	0	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	t0018	2220	4	0	3	1	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	t0019	2221	4	3	0	1	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	t0020	2217	3	3	0	0	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	t0021	2218	3	2	1	0	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	t0022	2222	3	0	2	0	1	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/1	t0023	2219	3	0	2	0	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	t0024	2218	2	2	0	0	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	t0025	2220	2	0	0	0	0	2	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	t0026	2219	2	0	0	0	2	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	t0027	2219	1	0	1	0	0	0	copy fasta	SLC4A1	chr17	44243390	44273135