JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC4A1_chr17_44243390_44273135	0/0	t0028	2223	1	0	0	0	0	1	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	t0029	2221	1	0	0	1	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	t0030	2219	1	0	0	1	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	t0031	2220	1	1	0	0	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	t0032	2219	1	1	0	0	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	t0033	2222	1	1	0	0	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	t0034	2223	1	0	0	1	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	t0035	2223	1	0	0	1	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	t0036	2221	1	1	0	0	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	t0037	2221	1	0	0	1	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	t0038	2218	1	0	1	0	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	t0039	2218	1	1	0	0	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	t0040	2221	1	1	0	0	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	t0041	2223	1	1	0	0	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	t0042	2219	1	0	0	1	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	t0043	2223	1	0	0	1	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	1/0	t0044	2219	1	0	0	0	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	t0045	2218	1	1	0	0	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	t0046	2217	1	1	0	0	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	t0047	2223	1	1	0	0	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A2_chr7_151054589_151081523	1/0	t0001	394	236	58	31	104	13	29	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	t0002	394	141	17	30	76	4	14	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	t0003	394	27	21	4	0	1	1	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/1	t0004	394	2	0	1	0	0	0	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A3_chr2_219622630_219646971	1/1	t0001	453	249	64	45	97	10	31	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	0/0	t0002	453	106	32	20	39	2	13	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	0/0	t0003	453	2	0	0	2	0	0	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	0/0	t0004	453	2	0	1	1	0	0	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	0/0	t0005	453	1	0	0	1	0	0	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A4_chr4_71182259_71577083	0/0	t0001	4475	30	2	0	20	0	8	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71182259_71577083	0/1	t0002	4476	22	4	5	5	0	7	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71182259_71577083	0/0	t0003	4476	17	4	0	9	0	4	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71182259_71577083	1/0	t0004	4476	13	11	0	1	0	0	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71182259_71577083	0/0	t0005	4446	13	6	3	3	0	1	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71182259_71577083	0/0	t0006	4446	9	4	3	1	0	1	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71182259_71577083	0/0	t0007	4475	8	8	0	0	0	0	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71182259_71577083	0/0	t0008	4475	3	0	0	3	0	0	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71182259_71577083	0/0	t0009	4476	3	3	0	0	0	0	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71182259_71577083	0/0	t0010	4476	3	3	0	0	0	0	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71182259_71577083	0/0	t0011	4446	2	2	0	0	0	0	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71182259_71577083	0/0	t0012	4476	2	0	0	0	0	2	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71182259_71577083	0/0	t0013	4446	2	0	0	0	1	1	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71182259_71577083	0/0	t0014	4446	2	2	0	0	0	0	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71182259_71577083	0/0	t0015	4476	2	2	0	0	0	0	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71182259_71577083	0/0	t0016	4476	2	1	1	0	0	0	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71182259_71577083	0/0	t0017	4476	2	2	0	0	0	0	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71182259_71577083	0/0	t0018	4476	2	2	0	0	0	0	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71182259_71577083	0/0	t0019	4476	1	0	0	0	1	0	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71182259_71577083	0/0	t0020	4476	1	1	0	0	0	0	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71182259_71577083	0/0	t0021	4476	1	1	0	0	0	0	copy fasta	SLC4A4	chr4	71182259	71577083