JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC4A4_chr4_71182259_71577083	0/0	t0022	4476	1	1	0	0	0	0	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71182259_71577083	0/0	t0023	4446	1	1	0	0	0	0	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71182259_71577083	0/0	t0024	4476	1	1	0	0	0	0	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71182259_71577083	0/0	t0025	4476	1	1	0	0	0	0	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71182259_71577083	0/0	t0026	4476	1	1	0	0	0	0	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71182259_71577083	0/0	t0027	4475	1	0	0	0	0	1	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71182259_71577083	0/0	t0028	4475	1	0	0	0	0	1	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71182259_71577083	0/0	t0029	4446	1	1	0	0	0	0	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71182259_71577083	0/0	t0030	4446	1	1	0	0	0	0	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71182259_71577083	0/0	t0031	4446	1	1	0	0	0	0	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71182259_71577083	0/0	t0032	4476	1	1	0	0	0	0	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71182259_71577083	0/0	t0033	4476	1	1	0	0	0	0	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71334020_71577083	0/0	t0001	4561	61	3	8	38	2	10	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A4_chr4_71334020_71577083	0/1	t0002	4562	37	6	15	6	1	8	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A4_chr4_71334020_71577083	0/0	t0003	4562	32	8	3	17	0	4	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A4_chr4_71334020_71577083	0/0	t0004	4532	20	5	10	3	0	2	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A4_chr4_71334020_71577083	1/0	t0005	4562	19	15	1	1	0	1	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A4_chr4_71334020_71577083	0/0	t0006	4532	15	6	3	5	0	1	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A4_chr4_71334020_71577083	0/0	t0007	4561	8	8	0	0	0	0	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A4_chr4_71334020_71577083	0/0	t0008	4532	3	0	1	0	1	1	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A4_chr4_71334020_71577083	0/0	t0009	4532	3	3	0	0	0	0	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A4_chr4_71334020_71577083	0/0	t0010	4562	3	2	0	1	0	0	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A4_chr4_71334020_71577083	0/0	t0011	4562	3	3	0	0	0	0	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A4_chr4_71334020_71577083	0/0	t0012	4562	3	3	0	0	0	0	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A4_chr4_71334020_71577083	0/0	t0013	4561	3	0	0	3	0	0	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A4_chr4_71334020_71577083	0/0	t0014	4558	2	0	0	0	1	1	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A4_chr4_71334020_71577083	0/0	t0015	4532	2	2	0	0	0	0	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A4_chr4_71334020_71577083	0/0	t0016	4562	2	0	0	0	0	2	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A4_chr4_71334020_71577083	0/0	t0017	4562	2	2	0	0	0	0	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A4_chr4_71334020_71577083	0/0	t0018	4562	2	1	1	0	0	0	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A4_chr4_71334020_71577083	0/0	t0019	4562	1	1	0	0	0	0	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A4_chr4_71334020_71577083	0/0	t0020	4562	1	1	0	0	0	0	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A4_chr4_71334020_71577083	0/0	t0021	4532	1	1	0	0	0	0	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A4_chr4_71334020_71577083	0/0	t0022	4532	1	1	0	0	0	0	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A4_chr4_71334020_71577083	0/0	t0023	4562	1	1	0	0	0	0	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A4_chr4_71334020_71577083	0/0	t0024	4562	1	1	0	0	0	0	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A4_chr4_71334020_71577083	0/0	t0025	4532	1	0	0	0	1	0	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A4_chr4_71334020_71577083	0/0	t0026	4561	1	0	0	0	0	1	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A4_chr4_71334020_71577083	0/0	t0027	4561	1	0	0	1	0	0	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A4_chr4_71334020_71577083	0/0	t0028	4561	1	0	1	0	0	0	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A4_chr4_71334020_71577083	0/0	t0029	4561	1	0	0	0	0	1	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A4_chr4_71334020_71577083	0/0	t0030	4561	1	0	1	0	0	0	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A4_chr4_71334020_71577083	0/0	t0031	4532	1	1	0	0	0	0	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A4_chr4_71334020_71577083	0/0	t0032	4562	1	0	0	1	0	0	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A5_chr2_74211242_74348416	1/0	t0001	2992	115	23	29	51	2	9	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A5_chr2_74211242_74348416	0/1	t0002	2992	60	5	9	39	0	6	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A5_chr2_74211242_74348416	0/0	t0003	2989	37	14	7	13	2	1	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A5_chr2_74211242_74348416	0/0	t0004	2989	9	9	0	0	0	0	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A5_chr2_74211242_74348416	0/0	t0005	2989	9	0	0	9	0	0	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A5_chr2_74211242_74348416	0/0	t0006	2992	7	0	0	7	0	0	copy fasta	SLC4A5	chr2	74211242	74348416