JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC4A5_chr2_74211242_74348416	0/0	t0007	2989	7	7	0	0	0	0	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A5_chr2_74211242_74348416	0/0	t0008	2992	7	6	1	0	0	0	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A5_chr2_74211242_74348416	0/0	t0009	2989	4	4	0	0	0	0	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A5_chr2_74211242_74348416	0/0	t0010	2992	3	3	0	0	0	0	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A5_chr2_74211242_74348416	0/0	t0011	2992	3	3	0	0	0	0	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A5_chr2_74211242_74348416	0/0	t0012	2992	3	0	0	3	0	0	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A5_chr2_74211242_74348416	0/0	t0013	2992	2	0	0	2	0	0	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A5_chr2_74211242_74348416	0/0	t0014	2989	2	2	0	0	0	0	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A5_chr2_74211242_74348416	0/0	t0015	2992	2	2	0	0	0	0	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A5_chr2_74211242_74348416	0/0	t0016	2992	1	1	0	0	0	0	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A5_chr2_74211242_74348416	0/0	t0017	2989	1	0	0	1	0	0	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A5_chr2_74211242_74348416	0/0	t0018	2989	1	0	1	0	0	0	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A5_chr2_74211242_74348416	0/0	t0019	2992	1	1	0	0	0	0	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A5_chr2_74211242_74348416	0/0	t0020	2989	1	1	0	0	0	0	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A5_chr2_74211242_74348416	0/0	t0021	2989	1	1	0	0	0	0	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A5_chr2_74211242_74348416	0/0	t0022	2992	1	0	1	0	0	0	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A5_chr2_74211242_74348416	0/0	t0023	2992	1	0	0	1	0	0	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A5_chr2_74211242_74348416	0/0	t0024	2992	1	0	0	1	0	0	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A5_chr2_74211242_74348416	0/0	t0025	2992	1	0	0	1	0	0	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A5_chr2_74211242_74348416	0/0	t0026	2992	1	1	0	0	0	0	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A5_chr2_74211242_74348416	0/0	t0027	2989	1	1	0	0	0	0	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A7_chr3_27367723_27489384	0/1	t0001	4301	100	21	17	39	5	17	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	t0002	4301	35	5	10	11	3	6	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	t0003	4300	32	0	13	11	1	7	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	t0004	4300	25	16	2	7	0	0	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	t0005	4296	20	2	1	17	0	0	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	t0006	4301	16	4	5	0	0	7	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	t0007	4301	10	9	1	0	0	0	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	t0008	4302	10	6	3	0	0	1	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	t0009	4301	9	9	0	0	0	0	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	t0010	4300	8	6	0	2	0	0	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	t0011	4300	7	0	2	0	4	1	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	t0012	4301	5	0	0	5	0	0	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	t0013	4301	4	2	2	0	0	0	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	t0014	4297	3	0	0	3	0	0	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	t0015	4301	2	0	0	0	2	0	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	t0016	4301	1	1	0	0	0	0	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	1/0	t0017	4300	1	0	0	0	0	0	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	t0018	4296	1	1	0	0	0	0	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	t0019	4300	1	1	0	0	0	0	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	t0020	4300	1	1	0	0	0	0	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	t0021	4301	1	0	1	0	0	0	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	t0022	4300	1	1	0	0	0	0	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	t0023	4302	1	1	0	0	0	0	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	t0024	4301	1	0	0	1	0	0	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	t0025	4301	1	0	0	0	0	1	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	t0026	4300	1	1	0	0	0	0	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	t0027	4301	1	0	1	0	0	0	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	t0028	4301	1	0	0	0	1	0	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	t0029	4300	1	1	0	0	0	0	copy fasta	SLC4A7	chr3	27367723	27489384