JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC4A7_chr3_27367723_27489384	0/0	t0030	4300	1	0	0	0	0	1	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	t0031	4297	1	0	0	0	0	1	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A8_chr12_51419831_51520763	0/0	t0001	8481	97	15	21	48	4	9	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/1	t0002	8482	67	11	22	16	6	11	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	1/0	t0003	8483	42	8	8	18	2	5	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0004	8482	34	3	2	26	1	2	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0005	8482	25	9	0	14	0	2	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0006	8482	8	8	0	0	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0007	8482	5	1	0	4	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0008	8481	5	5	0	0	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0009	8481	5	5	0	0	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0010	8483	4	4	0	0	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0011	8481	3	0	0	3	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0012	8481	3	0	0	3	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0013	8483	3	1	1	1	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0014	8482	3	2	1	0	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0015	8482	3	0	0	3	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0016	8484	3	0	0	3	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0017	8481	2	0	0	2	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0018	8481	2	0	0	2	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0019	8481	2	0	0	0	0	2	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0020	8481	2	2	0	0	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0021	8483	2	2	0	0	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0022	8482	2	2	0	0	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0023	8481	2	2	0	0	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0024	8482	2	0	0	2	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0025	8483	2	1	0	1	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0026	8481	2	0	0	0	1	1	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0027	8482	2	2	0	0	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0028	8481	1	0	0	1	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0029	8481	1	0	1	0	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0030	8481	1	0	1	0	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0031	8481	1	0	1	0	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0032	8481	1	0	0	1	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0033	8481	1	1	0	0	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0034	8481	1	0	1	0	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0035	8481	1	0	1	0	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0036	8483	1	1	0	0	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0037	8483	1	1	0	0	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0038	8483	1	0	0	1	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0039	8482	1	0	0	1	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0040	8481	1	1	0	0	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0041	8482	1	0	0	1	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0042	8482	1	1	0	0	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0043	8482	1	1	0	0	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0044	8482	1	1	0	0	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0045	8483	1	0	0	1	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0046	8481	1	1	0	0	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0047	8482	1	0	0	1	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0048	8482	1	0	0	1	0	0	copy fasta	SLC4A8	chr12	51419831	51520763