JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC4A8_chr12_51419831_51520763	0/0	t0049	8482	1	0	0	1	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0050	8482	1	0	0	1	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0051	8482	1	0	0	0	0	1	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0052	8482	1	0	0	0	0	1	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	t0053	8481	1	1	0	0	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A9_chr5_140355194_140380141	1/1	t0001	404	383	78	71	174	18	40	copy fasta	SLC4A9	chr5	140355194	140380141
SLC4A9_chr5_140355194_140380141	0/0	t0002	404	11	10	1	0	0	0	copy fasta	SLC4A9	chr5	140355194	140380141
SLC4A9_chr5_140355194_140380141	0/0	t0003	404	2	2	0	0	0	0	copy fasta	SLC4A9	chr5	140355194	140380141
SLC50A1_chr1_155130852_155143853	1/1	t0001	633	341	84	65	125	18	47	copy fasta	SLC50A1	chr1	155130852	155143853
SLC50A1_chr1_155130852_155143853	0/0	t0002	633	5	5	0	0	0	0	copy fasta	SLC50A1	chr1	155130852	155143853
SLC50A1_chr1_155130852_155143853	0/0	t0003	633	4	4	0	0	0	0	copy fasta	SLC50A1	chr1	155130852	155143853
SLC50A1_chr1_155130852_155143853	0/0	t0004	633	2	0	1	0	0	1	copy fasta	SLC50A1	chr1	155130852	155143853
SLC50A1_chr1_155130852_155143853	0/0	t0005	633	1	1	0	0	0	0	copy fasta	SLC50A1	chr1	155130852	155143853
SLC50A1_chr1_155130852_155143853	0/0	t0006	633	1	0	0	1	0	0	copy fasta	SLC50A1	chr1	155130852	155143853
SLC51A_chr3_196211534_196238427	0/0	t0001	408	163	37	24	77	6	19	copy fasta	SLC51A	chr3	196211534	196238427
SLC51A_chr3_196211534_196238427	1/1	t0002	408	127	52	40	8	8	17	copy fasta	SLC51A	chr3	196211534	196238427
SLC51A_chr3_196211534_196238427	0/0	t0003	408	82	3	13	56	3	7	copy fasta	SLC51A	chr3	196211534	196238427
SLC51A_chr3_196211534_196238427	0/0	t0004	408	31	2	5	20	1	3	copy fasta	SLC51A	chr3	196211534	196238427
SLC51A_chr3_196211534_196238427	0/0	t0005	408	17	0	0	13	0	4	copy fasta	SLC51A	chr3	196211534	196238427
SLC51A_chr3_196211534_196238427	0/0	t0006	407	3	3	0	0	0	0	copy fasta	SLC51A	chr3	196211534	196238427
SLC51A_chr3_196211534_196238427	0/0	t0007	408	1	0	0	1	0	0	copy fasta	SLC51A	chr3	196211534	196238427
SLC51A_chr3_196211534_196238427	0/0	t0008	408	1	1	0	0	0	0	copy fasta	SLC51A	chr3	196211534	196238427
SLC51A_chr3_196211534_196238427	0/0	t0009	421	1	1	0	0	0	0	copy fasta	SLC51A	chr3	196211534	196238427
SLC51A_chr3_196211534_196238427	0/0	t0010	408	1	1	0	0	0	0	copy fasta	SLC51A	chr3	196211534	196238427
SLC51A_chr3_196211534_196238427	0/0	t0011	408	1	0	0	1	0	0	copy fasta	SLC51A	chr3	196211534	196238427
SLC51B_chr15_65040387_65058397	1/1	t0001	538	281	42	59	125	17	36	copy fasta	SLC51B	chr15	65040387	65058397
SLC51B_chr15_65040387_65058397	0/0	t0002	538	24	22	2	0	0	0	copy fasta	SLC51B	chr15	65040387	65058397
SLC51B_chr15_65040387_65058397	0/0	t0003	537	22	15	5	1	1	0	copy fasta	SLC51B	chr15	65040387	65058397
SLC51B_chr15_65040387_65058397	0/0	t0004	538	10	10	0	0	0	0	copy fasta	SLC51B	chr15	65040387	65058397
SLC51B_chr15_65040387_65058397	0/0	t0005	538	1	1	0	0	0	0	copy fasta	SLC51B	chr15	65040387	65058397
SLC52A1_chr17_5027602_5040426	1/0	t0001	1029	166	5	20	114	6	20	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/1	t0002	1029	121	38	40	24	4	14	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	t0003	1029	44	3	13	26	1	1	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	t0004	1029	31	28	2	0	0	1	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	t0005	1029	26	2	3	18	2	1	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	t0006	1029	10	3	1	5	1	0	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	t0007	1029	8	8	0	0	0	0	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	t0008	1024	5	0	0	5	0	0	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	t0009	1029	3	3	0	0	0	0	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	t0010	1029	2	0	0	0	2	0	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	t0011	1029	2	0	1	0	0	1	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	t0012	1029	1	0	0	1	0	0	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	t0013	1029	1	0	0	1	0	0	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	t0014	1029	1	1	0	0	0	0	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	t0015	1029	1	1	0	0	0	0	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	t0016	1029	1	1	0	0	0	0	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	t0017	1029	1	1	0	0	0	0	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A2_chr8_144353613_144366272	1/1	t0001	821	350	72	65	156	13	42	copy fasta	SLC52A2	chr8	144353613	144366272
SLC52A2_chr8_144353613_144366272	0/0	t0002	821	14	14	0	0	0	0	copy fasta	SLC52A2	chr8	144353613	144366272
SLC52A2_chr8_144353613_144366272	0/0	t0003	821	5	0	3	0	2	0	copy fasta	SLC52A2	chr8	144353613	144366272