JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC52A2_chr8_144353613_144366272	0/0	t0004	821	3	1	2	0	0	0	copy fasta	SLC52A2	chr8	144353613	144366272
SLC52A2_chr8_144353613_144366272	0/0	t0005	818	3	3	0	0	0	0	copy fasta	SLC52A2	chr8	144353613	144366272
SLC52A2_chr8_144353613_144366272	0/0	t0006	821	2	2	0	0	0	0	copy fasta	SLC52A2	chr8	144353613	144366272
SLC52A2_chr8_144353613_144366272	0/0	t0007	821	2	2	0	0	0	0	copy fasta	SLC52A2	chr8	144353613	144366272
SLC52A2_chr8_144353613_144366272	0/0	t0008	821	1	0	0	0	1	0	copy fasta	SLC52A2	chr8	144353613	144366272
SLC52A2_chr8_144353613_144366272	0/0	t0009	821	1	0	0	1	0	0	copy fasta	SLC52A2	chr8	144353613	144366272
SLC52A2_chr8_144353613_144366272	0/0	t0010	821	1	1	0	0	0	0	copy fasta	SLC52A2	chr8	144353613	144366272
SLC52A2_chr8_144353613_144366272	0/0	t0011	821	1	1	0	0	0	0	copy fasta	SLC52A2	chr8	144353613	144366272
SLC52A2_chr8_144353613_144366272	0/0	t0012	821	1	0	0	1	0	0	copy fasta	SLC52A2	chr8	144353613	144366272
SLC52A2_chr8_144353613_144366272	0/0	t0013	821	1	1	0	0	0	0	copy fasta	SLC52A2	chr8	144353613	144366272
SLC52A2_chr8_144353613_144366272	0/0	t0014	821	1	1	0	0	0	0	copy fasta	SLC52A2	chr8	144353613	144366272
SLC52A3_chr20_755080_773500	0/1	t0001	1202	153	15	33	76	6	22	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	t0002	1193	66	22	9	23	6	6	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	t0003	1202	53	26	11	5	2	9	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	t0004	1201	48	0	4	44	0	0	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	t0005	1192	47	1	3	41	1	1	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	t0006	1201	23	0	6	12	0	5	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	t0007	1202	12	4	5	2	0	1	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	t0008	1192	9	0	0	9	0	0	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	t0009	1202	8	5	2	0	0	1	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	t0010	1193	5	0	3	0	1	1	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	t0011	1202	4	4	0	0	0	0	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	1/0	t0012	1202	4	2	1	0	0	0	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	t0013	1202	4	1	3	0	0	0	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	t0014	1193	3	2	1	0	0	0	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	t0015	1201	3	0	0	3	0	0	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	t0016	1193	3	3	0	0	0	0	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	t0017	1201	2	0	0	2	0	0	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	t0018	1193	2	2	0	0	0	0	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	t0019	1202	2	2	0	0	0	0	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	t0020	1201	2	0	2	0	0	0	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	t0021	1202	1	0	1	0	0	0	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	t0022	1193	1	1	0	0	0	0	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	t0023	1193	1	1	0	0	0	0	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	t0024	1193	1	1	0	0	0	0	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	t0025	1202	1	1	0	0	0	0	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	t0026	1202	1	0	0	0	0	1	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	t0027	1202	1	1	0	0	0	0	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	t0028	1202	1	1	0	0	0	0	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	t0029	1202	1	0	0	1	0	0	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	t0030	1202	1	1	0	0	0	0	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	t0031	1202	1	0	0	0	0	1	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	t0032	1182	1	1	0	0	0	0	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	t0033	1182	1	1	0	0	0	0	copy fasta	SLC52A3	chr20	755080	773500
SLC5A10_chr17_18947165_19027565	1/0	t0001	2176	139	52	22	44	2	18	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/1	t0002	2176	51	2	28	0	9	11	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	t0003	2176	48	1	4	41	0	2	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	t0004	2176	42	8	1	22	1	10	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	t0005	2176	35	2	4	26	0	3	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	t0006	2176	22	20	2	0	0	0	copy fasta	SLC5A10	chr17	18947165	19027565