JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC5A10_chr17_18947165_19027565	0/0	t0007	2176	3	0	1	0	0	2	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	t0008	2176	2	2	0	0	0	0	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	t0009	2176	1	0	0	1	0	0	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	t0010	2176	1	0	0	0	0	1	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	t0011	2176	1	0	0	1	0	0	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	t0012	2176	1	0	0	1	0	0	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	t0013	2176	1	0	0	1	0	0	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	t0014	2176	1	0	0	1	0	0	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	t0015	2176	1	0	1	0	0	0	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	t0016	2176	1	1	0	0	0	0	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	t0017	2176	1	0	0	1	0	0	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	t0018	2176	1	0	0	0	0	1	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	t0019	2176	1	0	0	1	0	0	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	t0020	2176	1	0	1	0	0	0	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A11_chr16_24840963_24916626	1/1	t0001	375	353	72	58	167	14	40	copy fasta	SLC5A11	chr16	24840963	24916626
SLC5A11_chr16_24840963_24916626	0/0	t0002	375	17	16	1	0	0	0	copy fasta	SLC5A11	chr16	24840963	24916626
SLC5A11_chr16_24840963_24916626	0/0	t0003	375	3	0	0	3	0	0	copy fasta	SLC5A11	chr16	24840963	24916626
SLC5A11_chr16_24840963_24916626	0/0	t0004	375	2	2	0	0	0	0	copy fasta	SLC5A11	chr16	24840963	24916626
SLC5A11_chr16_24840963_24916626	0/0	t0005	375	1	1	0	0	0	0	copy fasta	SLC5A11	chr16	24840963	24916626
SLC5A11_chr16_24840963_24916626	0/0	t0006	375	1	0	1	0	0	0	copy fasta	SLC5A11	chr16	24840963	24916626
SLC5A11_chr16_24840963_24916626	0/0	t0007	375	1	1	0	0	0	0	copy fasta	SLC5A11	chr16	24840963	24916626
SLC5A12_chr11_26662020_26727060	1/0	t0001	4429	34	4	11	17	0	1	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0002	4457	24	0	5	13	3	3	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0003	4461	24	0	4	16	1	3	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0004	4451	21	0	7	6	2	6	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0005	4479	16	0	0	15	0	1	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0006	4465	14	1	0	11	0	2	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0007	4483	9	0	0	9	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0008	4455	9	2	5	2	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0009	4453	8	0	1	4	1	2	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0010	4457	7	6	1	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0011	4465	6	6	0	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0012	4475	6	0	0	6	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0013	4499	6	0	5	0	1	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0014	4457	6	0	2	3	1	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0015	4455	6	0	2	3	0	1	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0016	4483	5	0	0	5	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0017	4437	5	2	0	1	2	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0018	4429	5	4	1	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0019	4429	5	5	0	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0020	4478	4	0	0	1	0	3	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0021	4457	4	4	0	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0022	4479	4	0	0	4	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0023	4459	4	0	0	4	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0024	4433	4	3	1	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0025	4457	4	3	1	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0026	4474	3	0	0	1	0	2	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0027	4491	3	0	2	0	1	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0028	4459	3	1	1	0	1	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0029	4471	3	3	0	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060