JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC5A12_chr11_26662020_26727060	0/0	t0080	4479	1	0	0	1	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0081	4487	1	0	0	1	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0082	4491	1	0	0	1	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0083	4495	1	0	0	0	1	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0084	4479	1	0	0	1	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0085	4483	1	0	0	1	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0086	4495	1	1	0	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0087	4495	1	0	1	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0088	4495	1	0	0	1	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0089	4481	1	0	0	1	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0090	4499	1	0	0	0	0	1	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0091	4491	1	0	0	1	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0092	4491	1	1	0	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0093	4487	1	0	1	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0094	4481	1	0	1	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0095	4447	1	0	0	1	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0096	4451	1	1	0	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0097	4455	1	0	1	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0098	4463	1	0	0	0	0	1	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0099	4467	1	1	0	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0100	4451	1	1	0	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/1	t0101	4453	1	0	0	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0102	4453	1	0	1	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0103	4429	1	0	1	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0104	4425	1	1	0	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0105	4429	1	1	0	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0106	4437	1	1	0	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0107	4449	1	0	1	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0108	4437	1	0	1	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0109	4455	1	1	0	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0110	4463	1	1	0	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0111	4467	1	1	0	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0112	4466	1	0	0	0	0	1	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0113	4459	1	1	0	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0114	4445	1	0	0	1	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0115	4465	1	0	0	1	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0116	4473	1	0	0	1	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0117	4473	1	1	0	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0118	4471	1	1	0	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0119	4481	1	1	0	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0120	4465	1	0	0	1	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0121	4535	1	0	0	1	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0122	4487	1	1	0	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0123	4487	1	0	0	1	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0124	4447	1	0	0	1	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0125	4463	1	0	0	1	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0126	4465	1	0	0	1	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0127	4429	1	1	0	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0128	4437	1	1	0	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0129	4429	1	0	0	1	0	0	copy fasta	SLC5A12	chr11	26662020	26727060