Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ACOX1_chr17_75936507_75984166	0/0	t0004	5336	22	2	1	14	3	2	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0005	5333	12	5	4	1	0	2	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0006	5335	6	0	1	0	1	4	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0007	5335	6	3	2	0	0	1	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0008	5332	6	5	1	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0009	5335	5	0	0	5	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0010	5336	5	1	0	4	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0011	5335	4	4	0	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0012	5335	4	4	0	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0013	5335	3	3	0	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0014	5336	3	3	0	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0015	5336	3	0	0	3	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0016	5336	3	3	0	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0017	5336	3	3	0	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0018	5335	3	2	0	1	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0019	5337	3	1	0	2	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0020	5336	3	0	0	1	0	2	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0021	5333	2	0	2	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0022	5334	2	0	0	2	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0023	5335	2	2	0	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0024	5340	2	2	0	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0025	5336	2	2	0	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0026	5334	2	0	0	2	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0027	5335	2	1	1	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0028	5336	2	0	1	1	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0029	5332	2	2	0	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0030	5334	2	2	0	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0031	5336	1	1	0	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0032	5335	1	0	0	1	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0033	5332	1	1	0	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0034	5332	1	0	0	1	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0035	5334	1	0	0	1	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0036	5335	1	0	0	1	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0037	5335	1	1	0	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0038	5335	1	0	0	1	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0039	5336	1	1	0	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0040	5335	1	0	1	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0041	5337	1	0	0	1	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0042	5332	1	0	0	1	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0043	5336	1	0	1	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0044	5335	1	0	1	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0045	5339	1	1	0	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0046	5335	1	1	0	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0047	5336	1	1	0	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0048	5337	1	1	0	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0049	5333	1	1	0	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0050	5333	1	1	0	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0051	5334	1	0	1	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0052	5333	1	1	0	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0053	5328	1	1	0	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166