Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BCR_chr22_23175509_23323037	0/0	t0074	2974	1	0	0	0	0	1	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0075	2974	1	1	0	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0076	2974	1	0	0	0	0	1	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0077	2974	1	1	0	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0078	2974	1	0	1	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0079	2974	1	0	0	0	0	1	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0080	2974	1	0	1	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0081	2974	1	0	0	1	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0082	2977	1	1	0	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0083	2977	1	1	0	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0084	2977	1	1	0	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0085	2974	1	1	0	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0086	2975	1	1	0	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0087	2977	1	0	0	1	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0088	2976	1	0	0	0	0	1	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0089	2977	1	0	0	1	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0090	2977	1	0	1	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0091	2977	1	0	0	1	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0092	2977	1	0	0	1	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0093	2977	1	0	0	1	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0094	2977	1	0	0	0	1	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0095	2977	1	0	0	1	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0096	2977	1	0	0	1	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0097	2977	1	0	0	1	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0098	2977	1	0	0	1	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0099	2977	1	0	1	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0100	2977	1	0	0	1	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0101	2977	1	0	0	1	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0102	2977	1	0	0	1	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0103	2977	1	0	0	1	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0104	2977	1	0	0	0	0	1	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0105	2977	1	1	0	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0106	2977	1	1	0	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0107	2977	1	1	0	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0108	2977	1	1	0	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0109	2977	1	1	0	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0110	2977	1	0	1	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0111	2977	1	0	0	0	0	1	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0112	2977	1	1	0	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0113	2977	1	1	0	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0114	2977	1	1	0	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0115	2977	1	1	0	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0116	2977	1	1	0	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0117	2978	1	1	0	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0118	2977	1	0	1	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0119	2977	1	1	0	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0120	2977	1	0	0	1	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0121	2975	1	1	0	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0122	2975	1	1	0	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	t0123	2975	1	1	0	0	0	0	copy fasta	BCR	chr22	23175509	23323037