JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC5A12_chr11_26662020_26727060	0/0	t0130	4467	1	1	0	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0131	4467	1	1	0	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0132	4453	1	0	0	1	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0133	4465	1	0	0	0	0	1	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0134	4469	1	0	0	0	0	1	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0135	4477	1	1	0	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0136	4478	1	1	0	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0137	4513	1	0	0	1	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0138	4479	1	0	0	1	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0139	4483	1	0	0	1	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0140	4487	1	0	0	1	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0141	4499	1	0	0	1	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0142	4507	1	0	0	1	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0143	4459	1	0	0	1	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0144	4463	1	0	0	1	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0145	4463	1	1	0	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0146	4473	1	0	0	1	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	t0147	4465	1	0	0	1	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A1_chr22_32038261_32118029	0/0	t0001	2838	69	32	11	14	2	10	copy fasta	SLC5A1	chr22	32038261	32118029
SLC5A1_chr22_32038261_32118029	0/0	t0002	2838	59	5	13	27	2	12	copy fasta	SLC5A1	chr22	32038261	32118029
SLC5A1_chr22_32038261_32118029	0/0	t0003	2839	30	9	0	18	0	3	copy fasta	SLC5A1	chr22	32038261	32118029
SLC5A1_chr22_32038261_32118029	0/1	t0004	2838	27	4	11	5	0	6	copy fasta	SLC5A1	chr22	32038261	32118029
SLC5A1_chr22_32038261_32118029	0/0	t0005	2838	11	1	4	0	3	3	copy fasta	SLC5A1	chr22	32038261	32118029
SLC5A1_chr22_32038261_32118029	0/0	t0006	2838	9	4	2	3	0	0	copy fasta	SLC5A1	chr22	32038261	32118029
SLC5A1_chr22_32038261_32118029	0/0	t0007	2838	8	8	0	0	0	0	copy fasta	SLC5A1	chr22	32038261	32118029
SLC5A1_chr22_32038261_32118029	1/0	t0008	2838	7	0	5	0	1	0	copy fasta	SLC5A1	chr22	32038261	32118029
SLC5A1_chr22_32038261_32118029	0/0	t0009	2838	4	4	0	0	0	0	copy fasta	SLC5A1	chr22	32038261	32118029
SLC5A1_chr22_32038261_32118029	0/0	t0010	2838	3	1	2	0	0	0	copy fasta	SLC5A1	chr22	32038261	32118029
SLC5A1_chr22_32038261_32118029	0/0	t0011	2838	3	3	0	0	0	0	copy fasta	SLC5A1	chr22	32038261	32118029
SLC5A1_chr22_32038261_32118029	0/0	t0012	2838	3	3	0	0	0	0	copy fasta	SLC5A1	chr22	32038261	32118029
SLC5A1_chr22_32038261_32118029	0/0	t0013	2838	3	0	3	0	0	0	copy fasta	SLC5A1	chr22	32038261	32118029
SLC5A1_chr22_32038261_32118029	0/0	t0014	2838	2	0	2	0	0	0	copy fasta	SLC5A1	chr22	32038261	32118029
SLC5A1_chr22_32038261_32118029	0/0	t0015	2838	2	0	0	2	0	0	copy fasta	SLC5A1	chr22	32038261	32118029
SLC5A1_chr22_32038261_32118029	0/0	t0016	2838	2	2	0	0	0	0	copy fasta	SLC5A1	chr22	32038261	32118029
SLC5A1_chr22_32038261_32118029	0/0	t0017	2839	1	0	0	0	0	1	copy fasta	SLC5A1	chr22	32038261	32118029
SLC5A1_chr22_32038261_32118029	0/0	t0018	2838	1	0	0	0	0	1	copy fasta	SLC5A1	chr22	32038261	32118029
SLC5A1_chr22_32038261_32118029	0/0	t0019	2838	1	1	0	0	0	0	copy fasta	SLC5A1	chr22	32038261	32118029
SLC5A1_chr22_32038261_32118029	0/0	t0020	2838	1	1	0	0	0	0	copy fasta	SLC5A1	chr22	32038261	32118029
SLC5A1_chr22_32038261_32118029	0/0	t0021	2838	1	1	0	0	0	0	copy fasta	SLC5A1	chr22	32038261	32118029
SLC5A1_chr22_32038261_32118029	0/0	t0022	2838	1	1	0	0	0	0	copy fasta	SLC5A1	chr22	32038261	32118029
SLC5A1_chr22_32038261_32118029	0/0	t0023	2838	1	1	0	0	0	0	copy fasta	SLC5A1	chr22	32038261	32118029
SLC5A1_chr22_32038261_32118029	0/0	t0024	2839	1	0	1	0	0	0	copy fasta	SLC5A1	chr22	32038261	32118029
SLC5A1_chr22_32038261_32118029	0/0	t0025	2839	1	1	0	0	0	0	copy fasta	SLC5A1	chr22	32038261	32118029
SLC5A1_chr22_32038261_32118029	0/0	t0026	2838	1	0	0	1	0	0	copy fasta	SLC5A1	chr22	32038261	32118029
SLC5A2_chr16_31478123_31495769	1/1	t0001	249	397	86	67	182	16	44	copy fasta	SLC5A2	chr16	31478123	31495769
SLC5A2_chr16_31478123_31495769	0/0	t0002	249	4	4	0	0	0	0	copy fasta	SLC5A2	chr16	31478123	31495769
SLC5A2_chr16_31478123_31495769	0/0	t0003	249	2	2	0	0	0	0	copy fasta	SLC5A2	chr16	31478123	31495769
SLC5A2_chr16_31478123_31495769	0/0	t0004	249	1	1	0	0	0	0	copy fasta	SLC5A2	chr16	31478123	31495769
SLC5A2_chr16_31478123_31495769	0/0	t0005	249	1	0	1	0	0	0	copy fasta	SLC5A2	chr16	31478123	31495769
SLC5A2_chr16_31478123_31495769	0/0	t0006	249	1	1	0	0	0	0	copy fasta	SLC5A2	chr16	31478123	31495769