JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC5A3_chr21_34068578_34111260	0/0	t0001	9411	60	16	22	17	2	3	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0002	9411	38	7	6	14	1	10	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/1	t0003	9410	33	1	9	14	4	4	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0004	9411	21	1	2	16	0	2	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0005	9412	17	0	4	13	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0006	9404	17	1	4	12	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0007	9411	12	0	3	7	1	1	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0008	9413	8	7	1	0	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0009	9411	8	6	2	0	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0010	9411	7	0	0	4	0	3	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0011	9410	7	7	0	0	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0012	9412	6	6	0	0	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0013	9415	6	2	0	0	0	4	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0014	9411	6	0	0	6	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0015	9411	5	4	1	0	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0016	9412	4	4	0	0	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0017	9411	4	0	0	4	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0018	9411	4	0	3	0	0	1	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0019	9411	3	0	0	3	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0020	9411	3	0	1	0	2	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0021	9412	3	3	0	0	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0022	9412	3	3	0	0	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0023	9412	3	1	1	1	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0024	9411	3	0	3	0	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0025	9410	3	0	1	2	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0026	9411	3	3	0	0	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0027	9412	3	2	1	0	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0028	9410	3	0	2	0	1	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0029	9413	3	3	0	0	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0030	9411	2	0	0	2	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0031	9411	2	2	0	0	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0032	9411	2	0	0	2	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0033	9411	2	0	0	2	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0034	9411	2	2	0	0	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0035	9411	2	0	0	2	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0036	9411	2	2	0	0	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	1/0	t0037	9410	1	0	0	0	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0038	9410	1	0	1	0	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0039	9411	1	0	0	1	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0040	9411	1	0	0	0	1	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0041	9410	1	0	0	1	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0042	9411	1	0	1	0	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0043	9412	1	0	0	1	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0044	9412	1	0	0	1	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0045	9411	1	0	0	1	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0046	9410	1	0	0	1	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0047	9411	1	0	1	0	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0048	9412	1	1	0	0	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0049	9411	1	0	0	1	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0050	9410	1	0	1	0	0	0	copy fasta	SLC5A3	chr21	34068578	34111260