JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC5A3_chr21_34068578_34111260	0/0	t0051	9405	1	0	0	1	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0052	9404	1	0	0	1	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0053	9411	1	0	1	0	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0054	9410	1	0	0	1	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0055	9410	1	0	0	0	0	1	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0056	9410	1	0	0	0	0	1	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0057	9410	1	0	0	1	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0058	9410	1	0	1	0	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0059	9405	1	0	0	1	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0060	9411	1	0	1	0	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0061	9411	1	0	0	0	0	1	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0062	9412	1	0	0	1	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0063	9411	1	0	0	1	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0064	9410	1	0	0	0	0	1	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0065	9412	1	0	0	0	0	1	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0066	9413	1	1	0	0	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0067	9411	1	0	1	0	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0068	9412	1	1	0	0	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0069	9411	1	0	0	1	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A3_chr21_34068578_34111260	0/0	t0070	9411	1	0	0	0	0	1	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A4_chr22_32213464_32260347	1/1	t0001	69	302	88	72	78	14	48	copy fasta	SLC5A4	chr22	32213464	32260347
SLC5A5_chr19_17866945_17900174	1/1	t0001	1673	279	55	49	128	9	36	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	t0002	1677	39	2	16	9	7	5	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	t0003	1674	20	4	1	14	0	1	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	t0004	1672	9	2	3	1	1	2	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	t0005	1673	9	0	2	7	0	0	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	t0006	1676	6	6	0	0	0	0	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	t0007	1676	5	5	0	0	0	0	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	t0008	1673	5	5	0	0	0	0	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	t0009	1673	4	0	3	0	0	1	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	t0010	1674	3	3	0	0	0	0	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	t0011	1673	3	0	0	3	0	0	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	t0012	1675	3	2	0	1	0	0	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	t0013	1675	2	2	0	0	0	0	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	t0014	1676	2	2	0	0	0	0	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	t0015	1673	2	0	0	2	0	0	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	t0016	1674	2	0	0	2	0	0	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	t0017	1674	2	2	0	0	0	0	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	t0018	1675	2	2	0	0	0	0	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	t0019	1673	1	0	0	1	0	0	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	t0020	1676	1	1	0	0	0	0	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	t0021	1672	1	1	0	0	0	0	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	t0022	1673	1	1	0	0	0	0	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	t0023	1673	1	0	0	0	0	1	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	t0024	1673	1	1	0	0	0	0	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	t0025	1673	1	1	0	0	0	0	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	t0026	1673	1	0	1	0	0	0	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	t0027	1673	1	0	0	1	0	0	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	t0028	1672	1	0	0	1	0	0	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	t0029	1673	1	1	0	0	0	0	copy fasta	SLC5A5	chr19	17866945	17900174