JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC5A5_chr19_17866945_17900174	0/0	t0030	1673	1	0	0	0	1	0	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	t0031	1674	1	1	0	0	0	0	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	t0032	1673	1	0	0	1	0	0	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	t0033	1676	1	1	0	0	0	0	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	t0034	1674	1	0	1	0	0	0	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	t0035	1674	1	0	0	1	0	0	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A6_chr2_27194587_27217268	0/1	t0001	1306	243	36	53	108	14	31	copy fasta	SLC5A6	chr2	27194587	27217268
SLC5A6_chr2_27194587_27217268	1/0	t0002	1306	59	43	12	0	0	3	copy fasta	SLC5A6	chr2	27194587	27217268
SLC5A6_chr2_27194587_27217268	0/0	t0003	1306	3	3	0	0	0	0	copy fasta	SLC5A6	chr2	27194587	27217268
SLC5A6_chr2_27194587_27217268	0/0	t0004	1306	3	3	0	0	0	0	copy fasta	SLC5A6	chr2	27194587	27217268
SLC5A6_chr2_27194587_27217268	0/0	t0005	1306	1	0	1	0	0	0	copy fasta	SLC5A6	chr2	27194587	27217268
SLC5A6_chr2_27194587_27217268	0/0	t0006	1306	1	0	0	1	0	0	copy fasta	SLC5A6	chr2	27194587	27217268
SLC5A6_chr2_27194587_27217268	0/0	t0007	1306	1	1	0	0	0	0	copy fasta	SLC5A6	chr2	27194587	27217268
SLC5A6_chr2_27194587_27217268	0/0	t0008	1306	1	0	0	1	0	0	copy fasta	SLC5A6	chr2	27194587	27217268
SLC5A7_chr2_107981524_108018994	0/0	t0001	3425	150	31	24	80	1	14	copy fasta	SLC5A7	chr2	107981524	108018994
SLC5A7_chr2_107981524_108018994	0/1	t0002	3425	82	33	12	14	8	14	copy fasta	SLC5A7	chr2	107981524	108018994
SLC5A7_chr2_107981524_108018994	0/0	t0003	3427	45	4	20	20	0	1	copy fasta	SLC5A7	chr2	107981524	108018994
SLC5A7_chr2_107981524_108018994	0/0	t0004	3421	36	4	12	13	4	3	copy fasta	SLC5A7	chr2	107981524	108018994
SLC5A7_chr2_107981524_108018994	1/0	t0005	3425	16	1	4	1	1	8	copy fasta	SLC5A7	chr2	107981524	108018994
SLC5A7_chr2_107981524_108018994	0/0	t0006	3425	12	0	0	12	0	0	copy fasta	SLC5A7	chr2	107981524	108018994
SLC5A7_chr2_107981524_108018994	0/0	t0007	3425	5	5	0	0	0	0	copy fasta	SLC5A7	chr2	107981524	108018994
SLC5A7_chr2_107981524_108018994	0/0	t0008	3422	4	4	0	0	0	0	copy fasta	SLC5A7	chr2	107981524	108018994
SLC5A7_chr2_107981524_108018994	0/0	t0009	3425	3	3	0	0	0	0	copy fasta	SLC5A7	chr2	107981524	108018994
SLC5A7_chr2_107981524_108018994	0/0	t0010	3425	2	2	0	0	0	0	copy fasta	SLC5A7	chr2	107981524	108018994
SLC5A7_chr2_107981524_108018994	0/0	t0011	3425	2	2	0	0	0	0	copy fasta	SLC5A7	chr2	107981524	108018994
SLC5A7_chr2_107981524_108018994	0/0	t0012	3425	2	0	0	0	0	2	copy fasta	SLC5A7	chr2	107981524	108018994
SLC5A7_chr2_107981524_108018994	0/0	t0013	3425	2	2	0	0	0	0	copy fasta	SLC5A7	chr2	107981524	108018994
SLC5A7_chr2_107981524_108018994	0/0	t0014	3421	1	0	1	0	0	0	copy fasta	SLC5A7	chr2	107981524	108018994
SLC5A7_chr2_107981524_108018994	0/0	t0015	3425	1	0	0	1	0	0	copy fasta	SLC5A7	chr2	107981524	108018994
SLC5A7_chr2_107981524_108018994	0/0	t0016	3425	1	0	0	0	0	1	copy fasta	SLC5A7	chr2	107981524	108018994
SLC5A7_chr2_107981524_108018994	0/0	t0017	3423	1	0	0	1	0	0	copy fasta	SLC5A7	chr2	107981524	108018994
SLC5A7_chr2_107981524_108018994	0/0	t0018	3425	1	0	1	0	0	0	copy fasta	SLC5A7	chr2	107981524	108018994
SLC5A7_chr2_107981524_108018994	0/0	t0019	3425	1	1	0	0	0	0	copy fasta	SLC5A7	chr2	107981524	108018994
SLC5A7_chr2_107981524_108018994	0/0	t0020	3425	1	1	0	0	0	0	copy fasta	SLC5A7	chr2	107981524	108018994
SLC5A7_chr2_107981524_108018994	0/0	t0021	3427	1	0	0	1	0	0	copy fasta	SLC5A7	chr2	107981524	108018994
SLC5A7_chr2_107981524_108018994	0/0	t0022	3425	1	1	0	0	0	0	copy fasta	SLC5A7	chr2	107981524	108018994
SLC5A7_chr2_107981524_108018994	0/0	t0023	3425	1	1	0	0	0	0	copy fasta	SLC5A7	chr2	107981524	108018994
SLC5A7_chr2_107981524_108018994	0/0	t0024	3425	1	0	0	0	0	1	copy fasta	SLC5A7	chr2	107981524	108018994
SLC5A7_chr2_107981524_108018994	0/0	t0025	3425	1	1	0	0	0	0	copy fasta	SLC5A7	chr2	107981524	108018994
SLC5A7_chr2_107981524_108018994	0/0	t0026	3425	1	0	0	1	0	0	copy fasta	SLC5A7	chr2	107981524	108018994
SLC5A7_chr2_107981524_108018994	0/0	t0027	3421	1	0	0	1	0	0	copy fasta	SLC5A7	chr2	107981524	108018994
SLC5A7_chr2_107981524_108018994	0/0	t0028	3425	1	0	0	1	0	0	copy fasta	SLC5A7	chr2	107981524	108018994
SLC5A8_chr12_101150493_101215238	0/0	t0001	2177	74	7	20	30	8	9	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	t0002	2178	71	8	6	49	3	5	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	t0003	2179	54	18	16	17	0	3	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	t0004	2177	52	4	12	25	1	10	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	t0005	2177	23	11	0	9	0	3	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/1	t0006	2178	22	2	3	10	4	2	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	t0007	2177	8	1	2	4	0	1	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	t0008	2178	7	1	1	5	0	0	copy fasta	SLC5A8	chr12	101150493	101215238