JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC5A8_chr12_101150493_101215238	0/0	t0009	2178	6	0	0	6	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	t0010	2177	6	6	0	0	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	t0011	2177	4	4	0	0	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	t0012	2177	4	4	0	0	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	t0013	2177	4	0	0	4	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	t0014	2176	3	0	2	1	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	t0015	2179	3	3	0	0	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	t0016	2177	2	2	0	0	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	t0017	2177	2	2	0	0	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	t0018	2177	2	2	0	0	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	t0019	2177	2	2	0	0	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	t0020	2177	2	0	0	1	0	1	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	t0021	2177	2	0	0	0	0	2	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	t0022	2179	1	1	0	0	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	t0023	2176	1	0	1	0	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	t0024	2178	1	1	0	0	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	t0025	2179	1	0	0	1	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	t0026	2177	1	0	0	1	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	t0027	2176	1	1	0	0	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	t0028	2176	1	1	0	0	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	t0029	2176	1	1	0	0	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	t0030	2178	1	0	0	0	0	1	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	t0031	2178	1	0	0	1	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	t0032	2177	1	0	0	0	0	1	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	t0033	2177	1	0	1	0	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	t0034	2176	1	0	0	1	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	t0035	2177	1	1	0	0	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	t0036	2177	1	1	0	0	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	t0037	2177	1	1	0	0	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	t0038	2177	1	1	0	0	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	t0039	2177	1	1	0	0	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	t0040	2178	1	1	0	0	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	t0041	2177	1	1	0	0	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	t0042	2177	1	1	0	0	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	t0043	2178	1	0	0	1	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A9_chr1_48217716_48253638	0/1	t0001	1117	266	33	65	136	9	22	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	1/0	t0002	1117	96	53	10	9	5	18	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	t0003	1117	36	0	2	33	0	1	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	t0004	1117	10	10	0	0	0	0	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	t0005	1117	3	0	0	3	0	0	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	t0006	1117	2	0	0	0	0	2	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	t0007	1117	1	1	0	0	0	0	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	t0008	1117	1	0	0	1	0	0	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	t0009	1117	1	0	0	1	0	0	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	t0010	1117	1	0	0	0	0	1	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	t0011	1117	1	1	0	0	0	0	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	t0012	1117	1	0	0	1	0	0	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	t0013	1117	1	0	1	0	0	0	copy fasta	SLC5A9	chr1	48217716	48253638
SLC66A1_chr1_19307326_19334300	0/0	t0001	1300	175	47	32	72	6	18	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A1_chr1_19307326_19334300	1/0	t0002	1300	162	19	40	89	3	10	copy fasta	SLC66A1	chr1	19307326	19334300