JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC66A1_chr1_19307326_19334300	0/0	t0003	1300	31	0	0	29	0	2	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A1_chr1_19307326_19334300	0/0	t0004	1300	30	6	7	8	3	6	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A1_chr1_19307326_19334300	0/0	t0005	1300	16	1	5	2	1	7	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A1_chr1_19307326_19334300	0/0	t0006	1300	6	5	1	0	0	0	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A1_chr1_19307326_19334300	0/0	t0007	1300	5	0	0	5	0	0	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A1_chr1_19307326_19334300	0/0	t0008	1300	5	5	0	0	0	0	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A1_chr1_19307326_19334300	0/0	t0009	1300	4	0	0	3	0	1	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A1_chr1_19307326_19334300	0/0	t0010	1300	2	2	0	0	0	0	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A1_chr1_19307326_19334300	0/0	t0011	1300	2	1	0	0	0	1	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A1_chr1_19307326_19334300	0/0	t0012	1286	1	0	0	1	0	0	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A1_chr1_19307326_19334300	0/1	t0013	1300	1	0	0	0	0	0	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A1_chr1_19307326_19334300	0/0	t0014	1300	1	1	0	0	0	0	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A1_chr1_19307326_19334300	0/0	t0015	1300	1	1	0	0	0	0	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A1_chr1_19307326_19334300	0/0	t0016	1300	1	1	0	0	0	0	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A1_chr1_19307326_19334300	0/0	t0017	1300	1	0	0	0	1	0	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A1_chr1_19307326_19334300	0/0	t0018	1300	1	1	0	0	0	0	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A1_chr1_19307326_19334300	0/0	t0019	1300	1	0	0	0	0	1	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A1_chr1_19307326_19334300	0/0	t0020	1300	1	0	0	1	0	0	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A1_chr1_19307326_19334300	0/0	t0021	1300	1	0	0	0	0	1	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A1_chr1_19307326_19334300	0/0	t0022	1300	1	0	1	0	0	0	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A1_chr1_19307326_19334300	0/0	t0023	1300	1	0	0	0	0	1	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A1_chr1_19307326_19334300	0/0	t0024	1300	1	0	0	1	0	0	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A1_chr1_19307326_19334300	0/0	t0025	1300	1	1	0	0	0	0	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A1_chr1_19307326_19334300	0/0	t0026	1300	1	1	0	0	0	0	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A1_chr1_19307326_19334300	0/0	t0027	1300	1	1	0	0	0	0	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A1_chr1_19307326_19334300	0/0	t0028	1300	1	0	0	1	0	0	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A1_chr1_19307326_19334300	0/0	t0029	1300	1	1	0	0	0	0	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A2_chr18_79897420_79956653	0/0	t0001	1731	108	7	23	55	4	19	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	1/0	t0002	1729	35	29	5	0	0	0	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/1	t0003	1731	30	3	3	17	0	6	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	t0004	1718	28	0	2	25	1	0	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	t0005	1731	23	1	8	0	3	11	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	t0006	1731	18	1	5	8	1	3	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	t0007	1731	17	11	1	5	0	0	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	t0008	1731	13	2	3	7	0	1	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	t0009	1731	10	4	2	3	0	1	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	t0010	1731	7	7	0	0	0	0	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	t0011	1731	7	0	4	0	3	0	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	t0012	1731	5	0	1	4	0	0	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	t0013	1731	4	4	0	0	0	0	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	t0014	1731	4	4	0	0	0	0	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	t0015	1731	3	3	0	0	0	0	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	t0016	1731	3	0	0	3	0	0	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	t0017	1731	3	0	0	3	0	0	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	t0018	1731	2	0	0	2	0	0	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	t0019	1731	2	0	0	2	0	0	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	t0020	1731	2	0	1	0	0	1	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	t0021	1731	2	2	0	0	0	0	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	t0022	1731	2	0	0	1	0	1	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	t0023	1729	2	1	1	0	0	0	copy fasta	SLC66A2	chr18	79897420	79956653