JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC66A2_chr18_79897420_79956653	0/0	t0024	1749	1	0	0	1	0	0	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	t0025	1731	1	0	0	1	0	0	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	t0026	1731	1	1	0	0	0	0	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	t0027	1731	1	1	0	0	0	0	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	t0028	1731	1	0	0	1	0	0	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	t0029	1731	1	0	0	1	0	0	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	t0030	1731	1	0	0	0	0	1	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	t0031	1731	1	0	1	0	0	0	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	t0032	1731	1	0	0	1	0	0	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	t0033	1731	1	0	0	1	0	0	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	t0034	1731	1	1	0	0	0	0	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	t0035	1731	1	0	1	0	0	0	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	t0036	1731	1	1	0	0	0	0	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	t0037	1729	1	1	0	0	0	0	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	t0038	1718	1	0	0	1	0	0	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	t0039	1731	1	0	0	1	0	0	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	t0040	1731	1	0	1	0	0	0	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	t0041	1731	1	0	0	0	0	1	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	t0042	1731	1	0	0	0	0	1	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	t0043	1731	1	1	0	0	0	0	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	t0044	1731	1	1	0	0	0	0	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	t0045	1718	1	0	0	1	0	0	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A3_chr2_11150467_11183856	0/0	t0001	1109	131	20	23	69	5	14	copy fasta	SLC66A3	chr2	11150467	11183856
SLC66A3_chr2_11150467_11183856	0/1	t0002	1101	106	6	29	44	7	19	copy fasta	SLC66A3	chr2	11150467	11183856
SLC66A3_chr2_11150467_11183856	1/0	t0003	1109	54	30	14	0	1	8	copy fasta	SLC66A3	chr2	11150467	11183856
SLC66A3_chr2_11150467_11183856	0/0	t0004	1109	34	13	7	14	0	0	copy fasta	SLC66A3	chr2	11150467	11183856
SLC66A3_chr2_11150467_11183856	0/0	t0005	1112	31	8	4	17	0	2	copy fasta	SLC66A3	chr2	11150467	11183856
SLC66A3_chr2_11150467_11183856	0/0	t0006	1109	16	0	0	15	1	0	copy fasta	SLC66A3	chr2	11150467	11183856
SLC66A3_chr2_11150467_11183856	0/0	t0007	1109	9	9	0	0	0	0	copy fasta	SLC66A3	chr2	11150467	11183856
SLC66A3_chr2_11150467_11183856	0/0	t0008	1098	7	0	3	3	0	1	copy fasta	SLC66A3	chr2	11150467	11183856
SLC66A3_chr2_11150467_11183856	0/0	t0009	1112	5	4	1	0	0	0	copy fasta	SLC66A3	chr2	11150467	11183856
SLC66A3_chr2_11150467_11183856	0/0	t0010	1101	3	2	1	0	0	0	copy fasta	SLC66A3	chr2	11150467	11183856
SLC66A3_chr2_11150467_11183856	0/0	t0011	1112	3	1	1	1	0	0	copy fasta	SLC66A3	chr2	11150467	11183856
SLC66A3_chr2_11150467_11183856	0/0	t0012	1112	1	0	1	0	0	0	copy fasta	SLC66A3	chr2	11150467	11183856
SLC66A3_chr2_11150467_11183856	0/0	t0013	1098	1	0	0	1	0	0	copy fasta	SLC66A3	chr2	11150467	11183856
SLC66A3_chr2_11150467_11183856	0/0	t0014	1109	1	0	0	1	0	0	copy fasta	SLC66A3	chr2	11150467	11183856
SLC66A3_chr2_11150467_11183856	0/0	t0015	1109	1	1	0	0	0	0	copy fasta	SLC66A3	chr2	11150467	11183856
SLC66A3_chr2_11150467_11183856	0/0	t0016	1109	1	0	0	1	0	0	copy fasta	SLC66A3	chr2	11150467	11183856
SLC6A11_chr3_10811228_10945714	1/1	t0001	2351	159	14	30	91	6	16	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	t0002	2371	86	30	24	22	3	7	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	t0003	2351	25	1	3	14	0	7	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	t0004	2351	24	0	1	20	0	3	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	t0005	2351	16	11	0	5	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	t0006	2351	9	9	0	0	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	t0007	2351	6	6	0	0	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	t0008	2371	6	6	0	0	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	t0009	2351	4	0	1	0	1	2	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	t0010	2371	3	3	0	0	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	t0011	2351	3	0	0	3	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	t0012	2351	2	0	0	0	2	0	copy fasta	SLC6A11	chr3	10811228	10945714