JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC6A11_chr3_10811228_10945714	0/0	t0013	2351	2	2	0	0	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	t0014	2351	2	1	0	1	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	t0015	2351	2	0	0	2	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	t0016	2351	1	0	0	1	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	t0017	2351	1	0	0	0	0	1	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	t0018	2371	1	1	0	0	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	t0019	2351	1	0	0	1	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	t0020	2351	1	0	0	1	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	t0021	2351	1	0	0	1	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	t0022	2351	1	0	1	0	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	t0023	2351	1	1	0	0	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	t0024	2351	1	0	0	1	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	t0025	2361	1	0	0	1	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	t0026	2351	1	1	0	0	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	t0027	2351	1	0	0	1	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	t0028	2351	1	0	0	1	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A12_chr12_185081_219157	1/0	t0001	1366	194	21	35	109	9	19	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/1	t0002	1366	127	31	30	50	2	13	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	t0003	1366	14	1	2	5	0	6	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	t0004	1366	14	1	5	8	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	t0005	1366	9	3	1	1	1	3	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	t0006	1366	8	2	1	4	0	1	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	t0007	1366	8	8	0	0	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	t0008	1366	6	5	1	0	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	t0009	1366	5	5	0	0	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	t0010	1366	4	3	0	0	1	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	t0011	1366	4	4	0	0	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	t0012	1366	4	0	1	0	1	2	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	t0013	1366	3	0	2	0	1	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	t0014	1366	2	2	0	0	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	t0015	1366	2	0	0	1	0	1	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	t0016	1366	2	0	1	0	0	1	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	t0017	1366	1	1	0	0	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	t0018	1366	1	1	0	0	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	t0019	1366	1	1	0	0	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	t0020	1366	1	0	0	1	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	t0021	1366	1	1	0	0	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	t0022	1366	1	0	0	1	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	t0023	1366	1	0	1	0	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	t0024	1366	1	0	0	0	0	1	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	t0025	1366	1	0	0	0	1	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	t0026	1366	1	1	0	0	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	t0027	1366	1	0	0	1	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	t0028	1366	1	0	0	1	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	t0029	1366	1	1	0	0	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	t0030	1366	1	0	0	0	0	1	copy fasta	SLC6A12	chr12	185081	219157
SLC6A13_chr12_215622_267836	1/1	t0001	380	438	95	79	202	15	45	copy fasta	SLC6A13	chr12	215622	267836
SLC6A13_chr12_215622_267836	0/0	t0002	380	3	0	1	0	1	1	copy fasta	SLC6A13	chr12	215622	267836
SLC6A13_chr12_215622_267836	0/0	t0003	380	1	1	0	0	0	0	copy fasta	SLC6A13	chr12	215622	267836
SLC6A14_chrX_116431606_116466458	0/1	t0001	2609	113	6	12	78	2	14	copy fasta	SLC6A14	chrX	116431606	116466458